Cargando…

Network-based protein-protein interaction prediction method maps perturbations of cancer interactome

The perturbations of protein-protein interactions (PPIs) were found to be the main cause of cancer. Previous PPI prediction methods which were trained with non-disease general PPI data were not compatible to map the PPI network in cancer. Therefore, we established a novel cancer specific PPI predict...

Descripción completa

Detalles Bibliográficos
Autores principales:	Qiu, Jiajun, Chen, Kui, Zhong, Chunlong, Zhu, Sihao, Ma, Xiao
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2021
Materias:	Methods
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8610286/ https://www.ncbi.nlm.nih.gov/pubmed/34727106 http://dx.doi.org/10.1371/journal.pgen.1009869

Ejemplares similares

Construction and application of a protein and genetic interaction network (yeast interactome)
por: Stuart, Gregory R., et al.
Publicado: (2009)

A Yeast BiFC-seq Method for Genome-wide Interactome Mapping
por: Shang, Limin, et al.
Publicado: (2022)

Defining the RNA interactome by total RNA‐associated protein purification
por: Shchepachev, Vadim, et al.
Publicado: (2019)

Functional classification of proteins for the prediction of cellular function from a protein-protein interaction network
por: Brun, Christine, et al.
Publicado: (2004)

Plant Protein-Protein Interaction Network and Interactome
por: Zhang, Yixiang, et al.
Publicado: (2010)

Modular decomposition of protein-protein interaction networks
por: Gagneur, Julien, et al.
Publicado: (2004)

The interactome: Predicting the protein-protein interactions in cells
por: Plewczyński, Dariusz, et al.
Publicado: (2008)

Comprehensive characterization of the Hsp70 interactome reveals novel client proteins and interactions mediated by posttranslational modifications
por: Nitika,, et al.
Publicado: (2022)

Cross-species cluster co-conservation: a new method for generating protein interaction networks
por: Karimpour-Fard, Anis, et al.
Publicado: (2007)

Computational Identification of Protein-Protein Interactions in Rice Based on the Predicted Rice Interactome Network
por: Zhu, Pengcheng, et al.
Publicado: (2011)

Sequence-based prediction of protein-protein interactions by means of codon usage
por: Najafabadi, Hamed Shateri, et al.
Publicado: (2008)

Interactome Mapping: Using Protein Microarray Technology to Reconstruct Diverse Protein Networks
por: Uzoma, Ijeoma, et al.
Publicado: (2013)

Mapping the Protein–Protein Interactome Networks Using Yeast Two-Hybrid Screens
por: Rajagopala, Seesandra Venkatappa
Publicado: (2015)

An integrative method to predict signalling perturbations for cellular transitions
por: Zaffaroni, Gaia, et al.
Publicado: (2019)

System-wide analyses of the fission yeast poly(A)(+) RNA interactome reveal insights into organization and function of RNA–protein complexes
por: Kilchert, Cornelia, et al.
Publicado: (2020)

Protein interactome mapping in Caenorhabditis elegans
por: Remmelzwaal, Sanne, et al.
Publicado: (2019)

X-inactivation: quantitative predictions of protein interactions in the Xist network
por: Agostini, Federico, et al.
Publicado: (2013)

MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome
por: Tian, Dechao, et al.
Publicado: (2020)

GTB-PPI: Predict Protein–protein Interactions Based on L1-regularized Logistic Regression and Gradient Tree Boosting
por: Yu, Bin, et al.
Publicado: (2020)

QAUST: Protein Function Prediction Using Structure Similarity, Protein Interaction, and Functional Motifs
por: Smaili, Fatima Zohra, et al.
Publicado: (2021)

How biologically relevant are interaction-based modules in protein networks?
por: Poyatos, Juan F, et al.
Publicado: (2004)

LuTHy: a double‐readout bioluminescence‐based two‐hybrid technology for quantitative mapping of protein–protein interactions in mammalian cells
por: Trepte, Philipp, et al.
Publicado: (2018)

A new computational approach to analyze human protein complexes and predict novel protein interactions
por: Zanivan, Sara, et al.
Publicado: (2007)

SPRINT: ultrafast protein-protein interaction prediction of the entire human interactome
por: Li, Yiwei, et al.
Publicado: (2017)

Predicting specificity in bZIP coiled-coil protein interactions
por: Fong, Jessica H, et al.
Publicado: (2004)

Consistent dissection of the protein interaction network by combining global and local metrics
por: Wang, Chunlin, et al.
Publicado: (2007)

Inferring protein domain interactions from databases of interacting proteins
por: Riley, Robert, et al.
Publicado: (2005)

Prediction of cassava protein interactome based on interolog method
por: Thanasomboon, Ratana, et al.
Publicado: (2017)

Optimized Reversed-Phase Liquid Chromatography/Mass Spectrometry Methods for Intact Protein Analysis and Peptide Mapping of Adeno-Associated Virus Proteins
por: Zhang, Ximo, et al.
Publicado: (2021)

A protein–protein interaction guided method for competitive transcription factor binding improves target predictions
por: Laurila, Kirsti, et al.
Publicado: (2009)

A global protein–lipid interactome map
por: Brehme, Marc, et al.
Publicado: (2010)

Protein–Protein Interactions Essentials: Key Concepts to Building and Analyzing Interactome Networks
por: De Las Rivas, Javier, et al.
Publicado: (2010)

Exploring dynamic protein-protein interactions in cassava through the integrative interactome network
por: Thanasomboon, Ratana, et al.
Publicado: (2020)

Pathway-driven analysis of synthetic lethal interactions in cancer using perturbation screens
por: Karimpour, Mina, et al.
Publicado: (2023)

InSite: a computational method for identifying protein-protein interaction binding sites on a proteome-wide scale
por: Wang, Haidong, et al.
Publicado: (2007)

A formal perturbation equation between genotype and phenotype determines the Evolutionary Action of protein-coding variations on fitness
por: Katsonis, Panagiotis, et al.
Publicado: (2014)

Bacterial protein meta-interactomes predict cross-species interactions and protein function
por: Caufield, J. Harry, et al.
Publicado: (2017)

A reference map of the human binary protein interactome
por: Luck, Katja, et al.
Publicado: (2020)

Genome-wide mapping of protein–DNA damage interaction by PADD-seq
por: Zhu, Yongchang, et al.
Publicado: (2023)

Analysis of CLIP and iCLIP methods for nucleotide-resolution studies of protein-RNA interactions
por: Sugimoto, Yoichiro, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_dcrqfu04mhtl1th356bg242j3b