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Scaling DNA data storage with nanoscale electrode wells

Synthetic DNA is an attractive medium for long-term data storage because of its density, ease of copying, sustainability, and longevity. Recent advances have focused on the development of new encoding algorithms, automation, preservation, and sequencing technologies. Despite progress in these areas,...

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Autores principales: Nguyen, Bichlien H., Takahashi, Christopher N., Gupta, Gagan, Smith, Jake A., Rouse, Richard, Berndt, Paul, Yekhanin, Sergey, Ward, David P., Ang, Siena D., Garvan, Patrick, Parker, Hsing-Yeh, Carlson, Rob, Carmean, Douglas, Ceze, Luis, Strauss, Karin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8612674/
https://www.ncbi.nlm.nih.gov/pubmed/34818035
http://dx.doi.org/10.1126/sciadv.abi6714
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author Nguyen, Bichlien H.
Takahashi, Christopher N.
Gupta, Gagan
Smith, Jake A.
Rouse, Richard
Berndt, Paul
Yekhanin, Sergey
Ward, David P.
Ang, Siena D.
Garvan, Patrick
Parker, Hsing-Yeh
Carlson, Rob
Carmean, Douglas
Ceze, Luis
Strauss, Karin
author_facet Nguyen, Bichlien H.
Takahashi, Christopher N.
Gupta, Gagan
Smith, Jake A.
Rouse, Richard
Berndt, Paul
Yekhanin, Sergey
Ward, David P.
Ang, Siena D.
Garvan, Patrick
Parker, Hsing-Yeh
Carlson, Rob
Carmean, Douglas
Ceze, Luis
Strauss, Karin
author_sort Nguyen, Bichlien H.
collection PubMed
description Synthetic DNA is an attractive medium for long-term data storage because of its density, ease of copying, sustainability, and longevity. Recent advances have focused on the development of new encoding algorithms, automation, preservation, and sequencing technologies. Despite progress in these areas, the most challenging hurdle in deployment of DNA data storage remains the write throughput, which limits data storage capacity. We have developed the first nanoscale DNA storage writer, which we expect to scale DNA write density to 25 × 10(6) sequences per square centimeter, three orders of magnitude improvement over existing DNA synthesis arrays. We show confinement of DNA synthesis to an area under 1 square micrometer, parallelized over millions of nanoelectrode wells and then successfully write and decode a message in DNA. DNA synthesis on this scale will enable write throughputs to reach megabytes per second and is a key enabler to a practical DNA data storage system.
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spelling pubmed-86126742021-12-06 Scaling DNA data storage with nanoscale electrode wells Nguyen, Bichlien H. Takahashi, Christopher N. Gupta, Gagan Smith, Jake A. Rouse, Richard Berndt, Paul Yekhanin, Sergey Ward, David P. Ang, Siena D. Garvan, Patrick Parker, Hsing-Yeh Carlson, Rob Carmean, Douglas Ceze, Luis Strauss, Karin Sci Adv Physical and Materials Sciences Synthetic DNA is an attractive medium for long-term data storage because of its density, ease of copying, sustainability, and longevity. Recent advances have focused on the development of new encoding algorithms, automation, preservation, and sequencing technologies. Despite progress in these areas, the most challenging hurdle in deployment of DNA data storage remains the write throughput, which limits data storage capacity. We have developed the first nanoscale DNA storage writer, which we expect to scale DNA write density to 25 × 10(6) sequences per square centimeter, three orders of magnitude improvement over existing DNA synthesis arrays. We show confinement of DNA synthesis to an area under 1 square micrometer, parallelized over millions of nanoelectrode wells and then successfully write and decode a message in DNA. DNA synthesis on this scale will enable write throughputs to reach megabytes per second and is a key enabler to a practical DNA data storage system. American Association for the Advancement of Science 2021-11-24 /pmc/articles/PMC8612674/ /pubmed/34818035 http://dx.doi.org/10.1126/sciadv.abi6714 Text en Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY). https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution license (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Physical and Materials Sciences
Nguyen, Bichlien H.
Takahashi, Christopher N.
Gupta, Gagan
Smith, Jake A.
Rouse, Richard
Berndt, Paul
Yekhanin, Sergey
Ward, David P.
Ang, Siena D.
Garvan, Patrick
Parker, Hsing-Yeh
Carlson, Rob
Carmean, Douglas
Ceze, Luis
Strauss, Karin
Scaling DNA data storage with nanoscale electrode wells
title Scaling DNA data storage with nanoscale electrode wells
title_full Scaling DNA data storage with nanoscale electrode wells
title_fullStr Scaling DNA data storage with nanoscale electrode wells
title_full_unstemmed Scaling DNA data storage with nanoscale electrode wells
title_short Scaling DNA data storage with nanoscale electrode wells
title_sort scaling dna data storage with nanoscale electrode wells
topic Physical and Materials Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8612674/
https://www.ncbi.nlm.nih.gov/pubmed/34818035
http://dx.doi.org/10.1126/sciadv.abi6714
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