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Deep co-supervision and attention fusion strategy for automatic COVID-19 lung infection segmentation on CT images

Due to the irregular shapes,various sizes and indistinguishable boundaries between the normal and infected tissues, it is still a challenging task to accurately segment the infected lesions of COVID-19 on CT images. In this paper, a novel segmentation scheme is proposed for the infections of COVID-1...

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Autores principales: Hu, Haigen, Shen, Leizhao, Guan, Qiu, Li, Xiaoxin, Zhou, Qianwei, Ruan, Su
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8612757/
https://www.ncbi.nlm.nih.gov/pubmed/34848897
http://dx.doi.org/10.1016/j.patcog.2021.108452
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author Hu, Haigen
Shen, Leizhao
Guan, Qiu
Li, Xiaoxin
Zhou, Qianwei
Ruan, Su
author_facet Hu, Haigen
Shen, Leizhao
Guan, Qiu
Li, Xiaoxin
Zhou, Qianwei
Ruan, Su
author_sort Hu, Haigen
collection PubMed
description Due to the irregular shapes,various sizes and indistinguishable boundaries between the normal and infected tissues, it is still a challenging task to accurately segment the infected lesions of COVID-19 on CT images. In this paper, a novel segmentation scheme is proposed for the infections of COVID-19 by enhancing supervised information and fusing multi-scale feature maps of different levels based on the encoder-decoder architecture. To this end, a deep collaborative supervision (Co-supervision) scheme is proposed to guide the network learning the features of edges and semantics. More specifically, an Edge Supervised Module (ESM) is firstly designed to highlight low-level boundary features by incorporating the edge supervised information into the initial stage of down-sampling. Meanwhile, an Auxiliary Semantic Supervised Module (ASSM) is proposed to strengthen high-level semantic information by integrating mask supervised information into the later stage. Then an Attention Fusion Module (AFM) is developed to fuse multiple scale feature maps of different levels by using an attention mechanism to reduce the semantic gaps between high-level and low-level feature maps. Finally, the effectiveness of the proposed scheme is demonstrated on four various COVID-19 CT datasets. The results show that the proposed three modules are all promising. Based on the baseline (ResUnet), using ESM, ASSM, or AFM alone can respectively increase Dice metric by 1.12%, 1.95%,1.63% in our dataset, while the integration by incorporating three models together can rise 3.97%. Compared with the existing approaches in various datasets, the proposed method can obtain better segmentation performance in some main metrics, and can achieve the best generalization and comprehensive performance.
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spelling pubmed-86127572021-11-26 Deep co-supervision and attention fusion strategy for automatic COVID-19 lung infection segmentation on CT images Hu, Haigen Shen, Leizhao Guan, Qiu Li, Xiaoxin Zhou, Qianwei Ruan, Su Pattern Recognit Article Due to the irregular shapes,various sizes and indistinguishable boundaries between the normal and infected tissues, it is still a challenging task to accurately segment the infected lesions of COVID-19 on CT images. In this paper, a novel segmentation scheme is proposed for the infections of COVID-19 by enhancing supervised information and fusing multi-scale feature maps of different levels based on the encoder-decoder architecture. To this end, a deep collaborative supervision (Co-supervision) scheme is proposed to guide the network learning the features of edges and semantics. More specifically, an Edge Supervised Module (ESM) is firstly designed to highlight low-level boundary features by incorporating the edge supervised information into the initial stage of down-sampling. Meanwhile, an Auxiliary Semantic Supervised Module (ASSM) is proposed to strengthen high-level semantic information by integrating mask supervised information into the later stage. Then an Attention Fusion Module (AFM) is developed to fuse multiple scale feature maps of different levels by using an attention mechanism to reduce the semantic gaps between high-level and low-level feature maps. Finally, the effectiveness of the proposed scheme is demonstrated on four various COVID-19 CT datasets. The results show that the proposed three modules are all promising. Based on the baseline (ResUnet), using ESM, ASSM, or AFM alone can respectively increase Dice metric by 1.12%, 1.95%,1.63% in our dataset, while the integration by incorporating three models together can rise 3.97%. Compared with the existing approaches in various datasets, the proposed method can obtain better segmentation performance in some main metrics, and can achieve the best generalization and comprehensive performance. Elsevier Ltd. 2022-04 2021-11-25 /pmc/articles/PMC8612757/ /pubmed/34848897 http://dx.doi.org/10.1016/j.patcog.2021.108452 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Hu, Haigen
Shen, Leizhao
Guan, Qiu
Li, Xiaoxin
Zhou, Qianwei
Ruan, Su
Deep co-supervision and attention fusion strategy for automatic COVID-19 lung infection segmentation on CT images
title Deep co-supervision and attention fusion strategy for automatic COVID-19 lung infection segmentation on CT images
title_full Deep co-supervision and attention fusion strategy for automatic COVID-19 lung infection segmentation on CT images
title_fullStr Deep co-supervision and attention fusion strategy for automatic COVID-19 lung infection segmentation on CT images
title_full_unstemmed Deep co-supervision and attention fusion strategy for automatic COVID-19 lung infection segmentation on CT images
title_short Deep co-supervision and attention fusion strategy for automatic COVID-19 lung infection segmentation on CT images
title_sort deep co-supervision and attention fusion strategy for automatic covid-19 lung infection segmentation on ct images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8612757/
https://www.ncbi.nlm.nih.gov/pubmed/34848897
http://dx.doi.org/10.1016/j.patcog.2021.108452
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