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2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs
The use of 2D alpha-shapes (α-shapes) to quantify morphological features of the retinal microvasculature could lead to imaging biomarkers for proliferative diabetic retinopathy (PDR). We tested our approach using the MESSIDOR dataset that consists of colour fundus photographs from 547 healthy indivi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8613232/ https://www.ncbi.nlm.nih.gov/pubmed/34819594 http://dx.doi.org/10.1038/s41598-021-02329-5 |
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author | Pead, Emma Giarratano, Ylenia Tatham, Andrew J. Bernabeu, Miguel O. Dhillon, Baljean Trucco, Emanuele MacGillivray, Tom |
author_facet | Pead, Emma Giarratano, Ylenia Tatham, Andrew J. Bernabeu, Miguel O. Dhillon, Baljean Trucco, Emanuele MacGillivray, Tom |
author_sort | Pead, Emma |
collection | PubMed |
description | The use of 2D alpha-shapes (α-shapes) to quantify morphological features of the retinal microvasculature could lead to imaging biomarkers for proliferative diabetic retinopathy (PDR). We tested our approach using the MESSIDOR dataset that consists of colour fundus photographs from 547 healthy individuals, 149 with mild diabetic retinopathy (DR), 239 with moderate DR, 199 pre-PDR and 53 PDR. The skeleton (centrelines) of the automatically segmented retinal vasculature was represented as an α-shape and the proposed parameters, complexity ([Formula: see text] ), spread (OpA), global shape (VS) and presence of abnormal angiogenesis (Grad(α)) were computed. In cross-sectional analysis, individuals with PDR had a lower [Formula: see text] , OpA and Grad(α) indicating a vasculature that is more complex, less spread (i.e. dense) and the presence of numerous small vessels. The results show that α-shape parameters characterise vascular abnormalities predictive of PDR (AUC 0.73; 95% CI [0.73 0.74]) and have therefore potential to reveal changes in retinal microvascular morphology. |
format | Online Article Text |
id | pubmed-8613232 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-86132322021-11-26 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs Pead, Emma Giarratano, Ylenia Tatham, Andrew J. Bernabeu, Miguel O. Dhillon, Baljean Trucco, Emanuele MacGillivray, Tom Sci Rep Article The use of 2D alpha-shapes (α-shapes) to quantify morphological features of the retinal microvasculature could lead to imaging biomarkers for proliferative diabetic retinopathy (PDR). We tested our approach using the MESSIDOR dataset that consists of colour fundus photographs from 547 healthy individuals, 149 with mild diabetic retinopathy (DR), 239 with moderate DR, 199 pre-PDR and 53 PDR. The skeleton (centrelines) of the automatically segmented retinal vasculature was represented as an α-shape and the proposed parameters, complexity ([Formula: see text] ), spread (OpA), global shape (VS) and presence of abnormal angiogenesis (Grad(α)) were computed. In cross-sectional analysis, individuals with PDR had a lower [Formula: see text] , OpA and Grad(α) indicating a vasculature that is more complex, less spread (i.e. dense) and the presence of numerous small vessels. The results show that α-shape parameters characterise vascular abnormalities predictive of PDR (AUC 0.73; 95% CI [0.73 0.74]) and have therefore potential to reveal changes in retinal microvascular morphology. Nature Publishing Group UK 2021-11-24 /pmc/articles/PMC8613232/ /pubmed/34819594 http://dx.doi.org/10.1038/s41598-021-02329-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Pead, Emma Giarratano, Ylenia Tatham, Andrew J. Bernabeu, Miguel O. Dhillon, Baljean Trucco, Emanuele MacGillivray, Tom 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs |
title | 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs |
title_full | 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs |
title_fullStr | 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs |
title_full_unstemmed | 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs |
title_short | 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs |
title_sort | 2d alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8613232/ https://www.ncbi.nlm.nih.gov/pubmed/34819594 http://dx.doi.org/10.1038/s41598-021-02329-5 |
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