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2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs

The use of 2D alpha-shapes (α-shapes) to quantify morphological features of the retinal microvasculature could lead to imaging biomarkers for proliferative diabetic retinopathy (PDR). We tested our approach using the MESSIDOR dataset that consists of colour fundus photographs from 547 healthy indivi...

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Autores principales: Pead, Emma, Giarratano, Ylenia, Tatham, Andrew J., Bernabeu, Miguel O., Dhillon, Baljean, Trucco, Emanuele, MacGillivray, Tom
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8613232/
https://www.ncbi.nlm.nih.gov/pubmed/34819594
http://dx.doi.org/10.1038/s41598-021-02329-5
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author Pead, Emma
Giarratano, Ylenia
Tatham, Andrew J.
Bernabeu, Miguel O.
Dhillon, Baljean
Trucco, Emanuele
MacGillivray, Tom
author_facet Pead, Emma
Giarratano, Ylenia
Tatham, Andrew J.
Bernabeu, Miguel O.
Dhillon, Baljean
Trucco, Emanuele
MacGillivray, Tom
author_sort Pead, Emma
collection PubMed
description The use of 2D alpha-shapes (α-shapes) to quantify morphological features of the retinal microvasculature could lead to imaging biomarkers for proliferative diabetic retinopathy (PDR). We tested our approach using the MESSIDOR dataset that consists of colour fundus photographs from 547 healthy individuals, 149 with mild diabetic retinopathy (DR), 239 with moderate DR, 199 pre-PDR and 53 PDR. The skeleton (centrelines) of the automatically segmented retinal vasculature was represented as an α-shape and the proposed parameters, complexity ([Formula: see text] ), spread (OpA), global shape (VS) and presence of abnormal angiogenesis (Grad(α)) were computed. In cross-sectional analysis, individuals with PDR had a lower [Formula: see text] , OpA and Grad(α) indicating a vasculature that is more complex, less spread (i.e. dense) and the presence of numerous small vessels. The results show that α-shape parameters characterise vascular abnormalities predictive of PDR (AUC 0.73; 95% CI [0.73 0.74]) and have therefore potential to reveal changes in retinal microvascular morphology.
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spelling pubmed-86132322021-11-26 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs Pead, Emma Giarratano, Ylenia Tatham, Andrew J. Bernabeu, Miguel O. Dhillon, Baljean Trucco, Emanuele MacGillivray, Tom Sci Rep Article The use of 2D alpha-shapes (α-shapes) to quantify morphological features of the retinal microvasculature could lead to imaging biomarkers for proliferative diabetic retinopathy (PDR). We tested our approach using the MESSIDOR dataset that consists of colour fundus photographs from 547 healthy individuals, 149 with mild diabetic retinopathy (DR), 239 with moderate DR, 199 pre-PDR and 53 PDR. The skeleton (centrelines) of the automatically segmented retinal vasculature was represented as an α-shape and the proposed parameters, complexity ([Formula: see text] ), spread (OpA), global shape (VS) and presence of abnormal angiogenesis (Grad(α)) were computed. In cross-sectional analysis, individuals with PDR had a lower [Formula: see text] , OpA and Grad(α) indicating a vasculature that is more complex, less spread (i.e. dense) and the presence of numerous small vessels. The results show that α-shape parameters characterise vascular abnormalities predictive of PDR (AUC 0.73; 95% CI [0.73 0.74]) and have therefore potential to reveal changes in retinal microvascular morphology. Nature Publishing Group UK 2021-11-24 /pmc/articles/PMC8613232/ /pubmed/34819594 http://dx.doi.org/10.1038/s41598-021-02329-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Pead, Emma
Giarratano, Ylenia
Tatham, Andrew J.
Bernabeu, Miguel O.
Dhillon, Baljean
Trucco, Emanuele
MacGillivray, Tom
2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs
title 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs
title_full 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs
title_fullStr 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs
title_full_unstemmed 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs
title_short 2D alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs
title_sort 2d alpha-shapes to quantify retinal microvasculature morphology and their application to proliferative diabetic retinopathy characterisation in fundus photographs
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8613232/
https://www.ncbi.nlm.nih.gov/pubmed/34819594
http://dx.doi.org/10.1038/s41598-021-02329-5
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