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Calibration of ionic and cellular cardiac electrophysiology models

Cardiac electrophysiology models are among the most mature and well‐studied mathematical models of biological systems. This maturity is bringing new challenges as models are being used increasingly to make quantitative rather than qualitative predictions. As such, calibrating the parameters within i...

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Autores principales: Whittaker, Dominic G., Clerx, Michael, Lei, Chon Lok, Christini, David J., Mirams, Gary R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2020
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8614115/
https://www.ncbi.nlm.nih.gov/pubmed/32084308
http://dx.doi.org/10.1002/wsbm.1482
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author Whittaker, Dominic G.
Clerx, Michael
Lei, Chon Lok
Christini, David J.
Mirams, Gary R.
author_facet Whittaker, Dominic G.
Clerx, Michael
Lei, Chon Lok
Christini, David J.
Mirams, Gary R.
author_sort Whittaker, Dominic G.
collection PubMed
description Cardiac electrophysiology models are among the most mature and well‐studied mathematical models of biological systems. This maturity is bringing new challenges as models are being used increasingly to make quantitative rather than qualitative predictions. As such, calibrating the parameters within ion current and action potential (AP) models to experimental data sets is a crucial step in constructing a predictive model. This review highlights some of the fundamental concepts in cardiac model calibration and is intended to be readily understood by computational and mathematical modelers working in other fields of biology. We discuss the classic and latest approaches to calibration in the electrophysiology field, at both the ion channel and cellular AP scales. We end with a discussion of the many challenges that work to date has raised and the need for reproducible descriptions of the calibration process to enable models to be recalibrated to new data sets and built upon for new studies. This article is categorized under: Analytical and Computational Methods > Computational Methods. Physiology > Mammalian Physiology in Health and Disease. Models of Systems Properties and Processes > Cellular Models.
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spelling pubmed-86141152021-11-30 Calibration of ionic and cellular cardiac electrophysiology models Whittaker, Dominic G. Clerx, Michael Lei, Chon Lok Christini, David J. Mirams, Gary R. Wiley Interdiscip Rev Syst Biol Med Advanced Reviews Cardiac electrophysiology models are among the most mature and well‐studied mathematical models of biological systems. This maturity is bringing new challenges as models are being used increasingly to make quantitative rather than qualitative predictions. As such, calibrating the parameters within ion current and action potential (AP) models to experimental data sets is a crucial step in constructing a predictive model. This review highlights some of the fundamental concepts in cardiac model calibration and is intended to be readily understood by computational and mathematical modelers working in other fields of biology. We discuss the classic and latest approaches to calibration in the electrophysiology field, at both the ion channel and cellular AP scales. We end with a discussion of the many challenges that work to date has raised and the need for reproducible descriptions of the calibration process to enable models to be recalibrated to new data sets and built upon for new studies. This article is categorized under: Analytical and Computational Methods > Computational Methods. Physiology > Mammalian Physiology in Health and Disease. Models of Systems Properties and Processes > Cellular Models. John Wiley & Sons, Inc. 2020-02-21 2020 /pmc/articles/PMC8614115/ /pubmed/32084308 http://dx.doi.org/10.1002/wsbm.1482 Text en © 2020 The Authors. WIREs Systems Biology and Medicine published by Wiley Periodicals, Inc. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Advanced Reviews
Whittaker, Dominic G.
Clerx, Michael
Lei, Chon Lok
Christini, David J.
Mirams, Gary R.
Calibration of ionic and cellular cardiac electrophysiology models
title Calibration of ionic and cellular cardiac electrophysiology models
title_full Calibration of ionic and cellular cardiac electrophysiology models
title_fullStr Calibration of ionic and cellular cardiac electrophysiology models
title_full_unstemmed Calibration of ionic and cellular cardiac electrophysiology models
title_short Calibration of ionic and cellular cardiac electrophysiology models
title_sort calibration of ionic and cellular cardiac electrophysiology models
topic Advanced Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8614115/
https://www.ncbi.nlm.nih.gov/pubmed/32084308
http://dx.doi.org/10.1002/wsbm.1482
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