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Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach

SIMPLE SUMMARY: Bladder cancer is a common cancer of the urinary tract, characterized by high metastatic potential and recurrence. The research applies a transfer learning approach on CT images (frontal, axial, and saggital axes) for the purpose of semantic segmentation of areas affected by bladder...

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Autores principales: Baressi Šegota, Sandi, Lorencin, Ivan, Smolić, Klara, Anđelić, Nikola, Markić, Dean, Mrzljak, Vedran, Štifanić, Daniel, Musulin, Jelena, Španjol, Josip, Car, Zlatan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8614660/
https://www.ncbi.nlm.nih.gov/pubmed/34827126
http://dx.doi.org/10.3390/biology10111134
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author Baressi Šegota, Sandi
Lorencin, Ivan
Smolić, Klara
Anđelić, Nikola
Markić, Dean
Mrzljak, Vedran
Štifanić, Daniel
Musulin, Jelena
Španjol, Josip
Car, Zlatan
author_facet Baressi Šegota, Sandi
Lorencin, Ivan
Smolić, Klara
Anđelić, Nikola
Markić, Dean
Mrzljak, Vedran
Štifanić, Daniel
Musulin, Jelena
Španjol, Josip
Car, Zlatan
author_sort Baressi Šegota, Sandi
collection PubMed
description SIMPLE SUMMARY: Bladder cancer is a common cancer of the urinary tract, characterized by high metastatic potential and recurrence. The research applies a transfer learning approach on CT images (frontal, axial, and saggital axes) for the purpose of semantic segmentation of areas affected by bladder cancer. A system consisting of AlexNet network for plane recognition, using transfer learning-based U-net networks for the segmentation task. Achieved results show that the proposed system has a high performance, suggesting possible use in clinical practice. ABSTRACT: Urinary bladder cancer is one of the most common cancers of the urinary tract. This cancer is characterized by its high metastatic potential and recurrence rate. Due to the high metastatic potential and recurrence rate, correct and timely diagnosis is crucial for successful treatment and care. With the aim of increasing diagnosis accuracy, artificial intelligence algorithms are introduced to clinical decision making and diagnostics. One of the standard procedures for bladder cancer diagnosis is computer tomography (CT) scanning. In this research, a transfer learning approach to the semantic segmentation of urinary bladder cancer masses from CT images is presented. The initial data set is divided into three sub-sets according to image planes: frontal (4413 images), axial (4993 images), and sagittal (996 images). First, AlexNet is utilized for the design of a plane recognition system, and it achieved high classification and generalization performances with an [Formula: see text] of 0.9999 and [Formula: see text] of 0.0006. Furthermore, by applying the transfer learning approach, significant improvements in both semantic segmentation and generalization performances were achieved. For the case of the frontal plane, the highest performances were achieved if pre-trained ResNet101 architecture was used as a backbone for U-net with [Formula: see text] up to 0.9587 and [Formula: see text] of 0.0059. When U-net was used for the semantic segmentation of urinary bladder cancer masses from images in the axial plane, the best results were achieved if pre-trained ResNet50 was used as a backbone, with a [Formula: see text] up to 0.9372 and [Formula: see text] of 0.0147. Finally, in the case of images in the sagittal plane, the highest results were achieved with VGG-16 as a backbone. In this case, [Formula: see text] values up to 0.9660 with a [Formula: see text] of 0.0486 were achieved. From the listed results, the proposed semantic segmentation system worked with high performance both from the semantic segmentation and generalization standpoints. The presented results indicate that there is the possibility for the utilization of the semantic segmentation system in clinical practice.
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spelling pubmed-86146602021-11-26 Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach Baressi Šegota, Sandi Lorencin, Ivan Smolić, Klara Anđelić, Nikola Markić, Dean Mrzljak, Vedran Štifanić, Daniel Musulin, Jelena Španjol, Josip Car, Zlatan Biology (Basel) Article SIMPLE SUMMARY: Bladder cancer is a common cancer of the urinary tract, characterized by high metastatic potential and recurrence. The research applies a transfer learning approach on CT images (frontal, axial, and saggital axes) for the purpose of semantic segmentation of areas affected by bladder cancer. A system consisting of AlexNet network for plane recognition, using transfer learning-based U-net networks for the segmentation task. Achieved results show that the proposed system has a high performance, suggesting possible use in clinical practice. ABSTRACT: Urinary bladder cancer is one of the most common cancers of the urinary tract. This cancer is characterized by its high metastatic potential and recurrence rate. Due to the high metastatic potential and recurrence rate, correct and timely diagnosis is crucial for successful treatment and care. With the aim of increasing diagnosis accuracy, artificial intelligence algorithms are introduced to clinical decision making and diagnostics. One of the standard procedures for bladder cancer diagnosis is computer tomography (CT) scanning. In this research, a transfer learning approach to the semantic segmentation of urinary bladder cancer masses from CT images is presented. The initial data set is divided into three sub-sets according to image planes: frontal (4413 images), axial (4993 images), and sagittal (996 images). First, AlexNet is utilized for the design of a plane recognition system, and it achieved high classification and generalization performances with an [Formula: see text] of 0.9999 and [Formula: see text] of 0.0006. Furthermore, by applying the transfer learning approach, significant improvements in both semantic segmentation and generalization performances were achieved. For the case of the frontal plane, the highest performances were achieved if pre-trained ResNet101 architecture was used as a backbone for U-net with [Formula: see text] up to 0.9587 and [Formula: see text] of 0.0059. When U-net was used for the semantic segmentation of urinary bladder cancer masses from images in the axial plane, the best results were achieved if pre-trained ResNet50 was used as a backbone, with a [Formula: see text] up to 0.9372 and [Formula: see text] of 0.0147. Finally, in the case of images in the sagittal plane, the highest results were achieved with VGG-16 as a backbone. In this case, [Formula: see text] values up to 0.9660 with a [Formula: see text] of 0.0486 were achieved. From the listed results, the proposed semantic segmentation system worked with high performance both from the semantic segmentation and generalization standpoints. The presented results indicate that there is the possibility for the utilization of the semantic segmentation system in clinical practice. MDPI 2021-11-04 /pmc/articles/PMC8614660/ /pubmed/34827126 http://dx.doi.org/10.3390/biology10111134 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Baressi Šegota, Sandi
Lorencin, Ivan
Smolić, Klara
Anđelić, Nikola
Markić, Dean
Mrzljak, Vedran
Štifanić, Daniel
Musulin, Jelena
Španjol, Josip
Car, Zlatan
Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach
title Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach
title_full Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach
title_fullStr Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach
title_full_unstemmed Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach
title_short Semantic Segmentation of Urinary Bladder Cancer Masses from CT Images: A Transfer Learning Approach
title_sort semantic segmentation of urinary bladder cancer masses from ct images: a transfer learning approach
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8614660/
https://www.ncbi.nlm.nih.gov/pubmed/34827126
http://dx.doi.org/10.3390/biology10111134
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