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Point detection through multi-instance deep heatmap regression for sutures in endoscopy
PURPOSE: Mitral valve repair is a complex minimally invasive surgery of the heart valve. In this context, suture detection from endoscopic images is a highly relevant task that provides quantitative information to analyse suturing patterns, assess prosthetic configurations and produce augmented real...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8616891/ https://www.ncbi.nlm.nih.gov/pubmed/34748152 http://dx.doi.org/10.1007/s11548-021-02523-w |
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author | Sharan, Lalith Romano, Gabriele Brand, Julian Kelm, Halvar Karck, Matthias De Simone, Raffaele Engelhardt, Sandy |
author_facet | Sharan, Lalith Romano, Gabriele Brand, Julian Kelm, Halvar Karck, Matthias De Simone, Raffaele Engelhardt, Sandy |
author_sort | Sharan, Lalith |
collection | PubMed |
description | PURPOSE: Mitral valve repair is a complex minimally invasive surgery of the heart valve. In this context, suture detection from endoscopic images is a highly relevant task that provides quantitative information to analyse suturing patterns, assess prosthetic configurations and produce augmented reality visualisations. Facial or anatomical landmark detection tasks typically contain a fixed number of landmarks, and use regression or fixed heatmap-based approaches to localize the landmarks. However in endoscopy, there are a varying number of sutures in every image, and the sutures may occur at any location in the annulus, as they are not semantically unique. METHOD: In this work, we formulate the suture detection task as a multi-instance deep heatmap regression problem, to identify entry and exit points of sutures. We extend our previous work, and introduce the novel use of a 2D Gaussian layer followed by a differentiable 2D spatial Soft-Argmax layer to function as a local non-maximum suppression. RESULTS: We present extensive experiments with multiple heatmap distribution functions and two variants of the proposed model. In the intra-operative domain, Variant 1 showed a mean [Formula: see text] of [Formula: see text] over the baseline. Similarly, in the simulator domain, Variant 1 showed a mean [Formula: see text] of [Formula: see text] over the baseline. CONCLUSION: The proposed model shows an improvement over the baseline in the intra-operative and the simulator domains. The data is made publicly available within the scope of the MICCAI AdaptOR2021 Challenge https://adaptor2021.github.io/, and the code at https://github.com/Cardio-AI/suture-detection-pytorch/. |
format | Online Article Text |
id | pubmed-8616891 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-86168912021-12-01 Point detection through multi-instance deep heatmap regression for sutures in endoscopy Sharan, Lalith Romano, Gabriele Brand, Julian Kelm, Halvar Karck, Matthias De Simone, Raffaele Engelhardt, Sandy Int J Comput Assist Radiol Surg Original Article PURPOSE: Mitral valve repair is a complex minimally invasive surgery of the heart valve. In this context, suture detection from endoscopic images is a highly relevant task that provides quantitative information to analyse suturing patterns, assess prosthetic configurations and produce augmented reality visualisations. Facial or anatomical landmark detection tasks typically contain a fixed number of landmarks, and use regression or fixed heatmap-based approaches to localize the landmarks. However in endoscopy, there are a varying number of sutures in every image, and the sutures may occur at any location in the annulus, as they are not semantically unique. METHOD: In this work, we formulate the suture detection task as a multi-instance deep heatmap regression problem, to identify entry and exit points of sutures. We extend our previous work, and introduce the novel use of a 2D Gaussian layer followed by a differentiable 2D spatial Soft-Argmax layer to function as a local non-maximum suppression. RESULTS: We present extensive experiments with multiple heatmap distribution functions and two variants of the proposed model. In the intra-operative domain, Variant 1 showed a mean [Formula: see text] of [Formula: see text] over the baseline. Similarly, in the simulator domain, Variant 1 showed a mean [Formula: see text] of [Formula: see text] over the baseline. CONCLUSION: The proposed model shows an improvement over the baseline in the intra-operative and the simulator domains. The data is made publicly available within the scope of the MICCAI AdaptOR2021 Challenge https://adaptor2021.github.io/, and the code at https://github.com/Cardio-AI/suture-detection-pytorch/. Springer International Publishing 2021-11-08 2021 /pmc/articles/PMC8616891/ /pubmed/34748152 http://dx.doi.org/10.1007/s11548-021-02523-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Sharan, Lalith Romano, Gabriele Brand, Julian Kelm, Halvar Karck, Matthias De Simone, Raffaele Engelhardt, Sandy Point detection through multi-instance deep heatmap regression for sutures in endoscopy |
title | Point detection through multi-instance deep heatmap regression for sutures in endoscopy |
title_full | Point detection through multi-instance deep heatmap regression for sutures in endoscopy |
title_fullStr | Point detection through multi-instance deep heatmap regression for sutures in endoscopy |
title_full_unstemmed | Point detection through multi-instance deep heatmap regression for sutures in endoscopy |
title_short | Point detection through multi-instance deep heatmap regression for sutures in endoscopy |
title_sort | point detection through multi-instance deep heatmap regression for sutures in endoscopy |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8616891/ https://www.ncbi.nlm.nih.gov/pubmed/34748152 http://dx.doi.org/10.1007/s11548-021-02523-w |
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