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Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water
Nuclear magnetic resonance (NMR) spectroscopy is a powerful and popular technique for probing the molecular structures, dynamics and chemical properties. However the conventional NMR spectroscopy is bottlenecked by its low sensitivity. Dynamic nuclear polarization (DNP) boosts NMR sensitivity by ord...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8616939/ https://www.ncbi.nlm.nih.gov/pubmed/34824218 http://dx.doi.org/10.1038/s41467-021-27067-0 |
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author | Dai, Danhua Wang, Xianwei Liu, Yiwei Yang, Xiao-Liang Glaubitz, Clemens Denysenkov, Vasyl He, Xiao Prisner, Thomas Mao, Jiafei |
author_facet | Dai, Danhua Wang, Xianwei Liu, Yiwei Yang, Xiao-Liang Glaubitz, Clemens Denysenkov, Vasyl He, Xiao Prisner, Thomas Mao, Jiafei |
author_sort | Dai, Danhua |
collection | PubMed |
description | Nuclear magnetic resonance (NMR) spectroscopy is a powerful and popular technique for probing the molecular structures, dynamics and chemical properties. However the conventional NMR spectroscopy is bottlenecked by its low sensitivity. Dynamic nuclear polarization (DNP) boosts NMR sensitivity by orders of magnitude and resolves this limitation. In liquid-state this revolutionizing technique has been restricted to a few specific non-biological model molecules in organic solvents. Here we show that the carbon polarization in small biological molecules, including carbohydrates and amino acids, can be enhanced sizably by in situ Overhauser DNP (ODNP) in water at room temperature and at high magnetic field. An observed connection between ODNP (13)C enhancement factor and paramagnetic (13)C NMR shift has led to the exploration of biologically relevant heterocyclic compound indole. The QM/MM MD simulation underscores the dynamics of intermolecular hydrogen bonds as the driving force for the scalar ODNP in a long-living radical-substrate complex. Our work reconciles results obtained by DNP spectroscopy, paramagnetic NMR and computational chemistry and provides new mechanistic insights into the high-field scalar ODNP. |
format | Online Article Text |
id | pubmed-8616939 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-86169392021-12-01 Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water Dai, Danhua Wang, Xianwei Liu, Yiwei Yang, Xiao-Liang Glaubitz, Clemens Denysenkov, Vasyl He, Xiao Prisner, Thomas Mao, Jiafei Nat Commun Article Nuclear magnetic resonance (NMR) spectroscopy is a powerful and popular technique for probing the molecular structures, dynamics and chemical properties. However the conventional NMR spectroscopy is bottlenecked by its low sensitivity. Dynamic nuclear polarization (DNP) boosts NMR sensitivity by orders of magnitude and resolves this limitation. In liquid-state this revolutionizing technique has been restricted to a few specific non-biological model molecules in organic solvents. Here we show that the carbon polarization in small biological molecules, including carbohydrates and amino acids, can be enhanced sizably by in situ Overhauser DNP (ODNP) in water at room temperature and at high magnetic field. An observed connection between ODNP (13)C enhancement factor and paramagnetic (13)C NMR shift has led to the exploration of biologically relevant heterocyclic compound indole. The QM/MM MD simulation underscores the dynamics of intermolecular hydrogen bonds as the driving force for the scalar ODNP in a long-living radical-substrate complex. Our work reconciles results obtained by DNP spectroscopy, paramagnetic NMR and computational chemistry and provides new mechanistic insights into the high-field scalar ODNP. Nature Publishing Group UK 2021-11-25 /pmc/articles/PMC8616939/ /pubmed/34824218 http://dx.doi.org/10.1038/s41467-021-27067-0 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Dai, Danhua Wang, Xianwei Liu, Yiwei Yang, Xiao-Liang Glaubitz, Clemens Denysenkov, Vasyl He, Xiao Prisner, Thomas Mao, Jiafei Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water |
title | Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water |
title_full | Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water |
title_fullStr | Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water |
title_full_unstemmed | Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water |
title_short | Room-temperature dynamic nuclear polarization enhanced NMR spectroscopy of small biological molecules in water |
title_sort | room-temperature dynamic nuclear polarization enhanced nmr spectroscopy of small biological molecules in water |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8616939/ https://www.ncbi.nlm.nih.gov/pubmed/34824218 http://dx.doi.org/10.1038/s41467-021-27067-0 |
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