Cargando…

Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management

In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potent...

Descripción completa

Detalles Bibliográficos
Autores principales: Savoi, Stefania, Arapitsas, Panagiotis, Duchêne, Éric, Nikolantonaki, Maria, Ontañón, Ignacio, Carlin, Silvia, Schwander, Florian, Gougeon, Régis D., Ferreira, António César Silva, Theodoridis, Georgios, Töpfer, Reinhard, Vrhovsek, Urska, Adam-Blondon, Anne-Francoise, Pezzotti, Mario, Mattivi, Fulvio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8618349/
https://www.ncbi.nlm.nih.gov/pubmed/34822415
http://dx.doi.org/10.3390/metabo11110757
_version_ 1784604726077161472
author Savoi, Stefania
Arapitsas, Panagiotis
Duchêne, Éric
Nikolantonaki, Maria
Ontañón, Ignacio
Carlin, Silvia
Schwander, Florian
Gougeon, Régis D.
Ferreira, António César Silva
Theodoridis, Georgios
Töpfer, Reinhard
Vrhovsek, Urska
Adam-Blondon, Anne-Francoise
Pezzotti, Mario
Mattivi, Fulvio
author_facet Savoi, Stefania
Arapitsas, Panagiotis
Duchêne, Éric
Nikolantonaki, Maria
Ontañón, Ignacio
Carlin, Silvia
Schwander, Florian
Gougeon, Régis D.
Ferreira, António César Silva
Theodoridis, Georgios
Töpfer, Reinhard
Vrhovsek, Urska
Adam-Blondon, Anne-Francoise
Pezzotti, Mario
Mattivi, Fulvio
author_sort Savoi, Stefania
collection PubMed
description In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed.
format Online
Article
Text
id pubmed-8618349
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-86183492021-11-27 Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management Savoi, Stefania Arapitsas, Panagiotis Duchêne, Éric Nikolantonaki, Maria Ontañón, Ignacio Carlin, Silvia Schwander, Florian Gougeon, Régis D. Ferreira, António César Silva Theodoridis, Georgios Töpfer, Reinhard Vrhovsek, Urska Adam-Blondon, Anne-Francoise Pezzotti, Mario Mattivi, Fulvio Metabolites Technical Note In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed. MDPI 2021-11-03 /pmc/articles/PMC8618349/ /pubmed/34822415 http://dx.doi.org/10.3390/metabo11110757 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Technical Note
Savoi, Stefania
Arapitsas, Panagiotis
Duchêne, Éric
Nikolantonaki, Maria
Ontañón, Ignacio
Carlin, Silvia
Schwander, Florian
Gougeon, Régis D.
Ferreira, António César Silva
Theodoridis, Georgios
Töpfer, Reinhard
Vrhovsek, Urska
Adam-Blondon, Anne-Francoise
Pezzotti, Mario
Mattivi, Fulvio
Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management
title Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management
title_full Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management
title_fullStr Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management
title_full_unstemmed Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management
title_short Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management
title_sort grapevine and wine metabolomics-based guidelines for fair data and metadata management
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8618349/
https://www.ncbi.nlm.nih.gov/pubmed/34822415
http://dx.doi.org/10.3390/metabo11110757
work_keys_str_mv AT savoistefania grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT arapitsaspanagiotis grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT ducheneeric grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT nikolantonakimaria grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT ontanonignacio grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT carlinsilvia grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT schwanderflorian grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT gougeonregisd grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT ferreiraantoniocesarsilva grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT theodoridisgeorgios grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT topferreinhard grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT vrhovsekurska grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT adamblondonannefrancoise grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT pezzottimario grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement
AT mattivifulvio grapevineandwinemetabolomicsbasedguidelinesforfairdataandmetadatamanagement