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Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management
In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potent...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8618349/ https://www.ncbi.nlm.nih.gov/pubmed/34822415 http://dx.doi.org/10.3390/metabo11110757 |
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author | Savoi, Stefania Arapitsas, Panagiotis Duchêne, Éric Nikolantonaki, Maria Ontañón, Ignacio Carlin, Silvia Schwander, Florian Gougeon, Régis D. Ferreira, António César Silva Theodoridis, Georgios Töpfer, Reinhard Vrhovsek, Urska Adam-Blondon, Anne-Francoise Pezzotti, Mario Mattivi, Fulvio |
author_facet | Savoi, Stefania Arapitsas, Panagiotis Duchêne, Éric Nikolantonaki, Maria Ontañón, Ignacio Carlin, Silvia Schwander, Florian Gougeon, Régis D. Ferreira, António César Silva Theodoridis, Georgios Töpfer, Reinhard Vrhovsek, Urska Adam-Blondon, Anne-Francoise Pezzotti, Mario Mattivi, Fulvio |
author_sort | Savoi, Stefania |
collection | PubMed |
description | In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed. |
format | Online Article Text |
id | pubmed-8618349 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-86183492021-11-27 Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management Savoi, Stefania Arapitsas, Panagiotis Duchêne, Éric Nikolantonaki, Maria Ontañón, Ignacio Carlin, Silvia Schwander, Florian Gougeon, Régis D. Ferreira, António César Silva Theodoridis, Georgios Töpfer, Reinhard Vrhovsek, Urska Adam-Blondon, Anne-Francoise Pezzotti, Mario Mattivi, Fulvio Metabolites Technical Note In the era of big and omics data, good organization, management, and description of experimental data are crucial for achieving high-quality datasets. This, in turn, is essential for the export of robust results, to publish reliable papers, make data more easily available, and unlock the huge potential of data reuse. Lately, more and more journals now require authors to share data and metadata according to the FAIR (Findable, Accessible, Interoperable, Reusable) principles. This work aims to provide a step-by-step guideline for the FAIR data and metadata management specific to grapevine and wine science. In detail, the guidelines include recommendations for the organization of data and metadata regarding (i) meaningful information on experimental design and phenotyping, (ii) sample collection, (iii) sample preparation, (iv) chemotype analysis, (v) data analysis (vi) metabolite annotation, and (vii) basic ontologies. We hope that these guidelines will be helpful for the grapevine and wine metabolomics community and that it will benefit from the true potential of data usage in creating new knowledge being revealed. MDPI 2021-11-03 /pmc/articles/PMC8618349/ /pubmed/34822415 http://dx.doi.org/10.3390/metabo11110757 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Technical Note Savoi, Stefania Arapitsas, Panagiotis Duchêne, Éric Nikolantonaki, Maria Ontañón, Ignacio Carlin, Silvia Schwander, Florian Gougeon, Régis D. Ferreira, António César Silva Theodoridis, Georgios Töpfer, Reinhard Vrhovsek, Urska Adam-Blondon, Anne-Francoise Pezzotti, Mario Mattivi, Fulvio Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management |
title | Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management |
title_full | Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management |
title_fullStr | Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management |
title_full_unstemmed | Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management |
title_short | Grapevine and Wine Metabolomics-Based Guidelines for FAIR Data and Metadata Management |
title_sort | grapevine and wine metabolomics-based guidelines for fair data and metadata management |
topic | Technical Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8618349/ https://www.ncbi.nlm.nih.gov/pubmed/34822415 http://dx.doi.org/10.3390/metabo11110757 |
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