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Analysis of Gastrointestinal Acoustic Activity Using Deep Neural Networks

Automated bowel sound (BS) analysis methods were already well developed by the early 2000s. Accuracy of ~90% had been achieved by several teams using various analytical approaches. Clinical research on BS had revealed their high potential in the non-invasive investigation of irritable bowel syndrome...

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Autores principales: Ficek, Jakub, Radzikowski, Kacper, Nowak, Jan Krzysztof, Yoshie, Osamu, Walkowiak, Jaroslaw, Nowak, Robert
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8618847/
https://www.ncbi.nlm.nih.gov/pubmed/34833679
http://dx.doi.org/10.3390/s21227602
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author Ficek, Jakub
Radzikowski, Kacper
Nowak, Jan Krzysztof
Yoshie, Osamu
Walkowiak, Jaroslaw
Nowak, Robert
author_facet Ficek, Jakub
Radzikowski, Kacper
Nowak, Jan Krzysztof
Yoshie, Osamu
Walkowiak, Jaroslaw
Nowak, Robert
author_sort Ficek, Jakub
collection PubMed
description Automated bowel sound (BS) analysis methods were already well developed by the early 2000s. Accuracy of ~90% had been achieved by several teams using various analytical approaches. Clinical research on BS had revealed their high potential in the non-invasive investigation of irritable bowel syndrome to study gastrointestinal motility and in a surgical setting. This article proposes a novel methodology for the analysis of BS using hybrid convolutional and recursive neural networks. It is one of the first methods of using deep learning to be widely explored. We have developed an experimental pipeline and evaluated our results with a new dataset collected using a device with a dedicated contact microphone. Data have been collected at night-time, which is the most interesting period from a neurogastroenterological point of view. Previous works had ignored this period and instead kept brief records only during the day. Our algorithm can detect bowel sounds with an accuracy >93%. Moreover, we have achieved a very high specificity (>97%), crucial in diagnosis. The results have been checked with a medical professional, and they successfully support clinical diagnosis. We have developed a client-server system allowing medical practitioners to upload the recordings from their patients and have them analyzed online. This system is available online. Although BS research is technologically mature, it still lacks a uniform methodology, an international forum for discussion, and an open platform for data exchange, and therefore it is not commonly used. Our server could provide a starting point for establishing a common framework in BS research.
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spelling pubmed-86188472021-11-27 Analysis of Gastrointestinal Acoustic Activity Using Deep Neural Networks Ficek, Jakub Radzikowski, Kacper Nowak, Jan Krzysztof Yoshie, Osamu Walkowiak, Jaroslaw Nowak, Robert Sensors (Basel) Article Automated bowel sound (BS) analysis methods were already well developed by the early 2000s. Accuracy of ~90% had been achieved by several teams using various analytical approaches. Clinical research on BS had revealed their high potential in the non-invasive investigation of irritable bowel syndrome to study gastrointestinal motility and in a surgical setting. This article proposes a novel methodology for the analysis of BS using hybrid convolutional and recursive neural networks. It is one of the first methods of using deep learning to be widely explored. We have developed an experimental pipeline and evaluated our results with a new dataset collected using a device with a dedicated contact microphone. Data have been collected at night-time, which is the most interesting period from a neurogastroenterological point of view. Previous works had ignored this period and instead kept brief records only during the day. Our algorithm can detect bowel sounds with an accuracy >93%. Moreover, we have achieved a very high specificity (>97%), crucial in diagnosis. The results have been checked with a medical professional, and they successfully support clinical diagnosis. We have developed a client-server system allowing medical practitioners to upload the recordings from their patients and have them analyzed online. This system is available online. Although BS research is technologically mature, it still lacks a uniform methodology, an international forum for discussion, and an open platform for data exchange, and therefore it is not commonly used. Our server could provide a starting point for establishing a common framework in BS research. MDPI 2021-11-16 /pmc/articles/PMC8618847/ /pubmed/34833679 http://dx.doi.org/10.3390/s21227602 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Ficek, Jakub
Radzikowski, Kacper
Nowak, Jan Krzysztof
Yoshie, Osamu
Walkowiak, Jaroslaw
Nowak, Robert
Analysis of Gastrointestinal Acoustic Activity Using Deep Neural Networks
title Analysis of Gastrointestinal Acoustic Activity Using Deep Neural Networks
title_full Analysis of Gastrointestinal Acoustic Activity Using Deep Neural Networks
title_fullStr Analysis of Gastrointestinal Acoustic Activity Using Deep Neural Networks
title_full_unstemmed Analysis of Gastrointestinal Acoustic Activity Using Deep Neural Networks
title_short Analysis of Gastrointestinal Acoustic Activity Using Deep Neural Networks
title_sort analysis of gastrointestinal acoustic activity using deep neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8618847/
https://www.ncbi.nlm.nih.gov/pubmed/34833679
http://dx.doi.org/10.3390/s21227602
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