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Simple and Rapid Assembly of TALE Modules Based on the Degeneracy of the Codons and Trimer Repeats

Transcription activator-like effectors (TALEs) have been effectively used for targeted genome editing, transcriptional regulation, epigenetic modification, and locus-specific DNA imaging. However, with the advent of the clustered regularly interspaced short palindromic repeat/Cas9 system, an easy-to...

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Autores principales: Cheng, Lingyin, Zhou, Xiaoqing, Zheng, Yuling, Tang, Chengcheng, Liu, Yu, Zheng, Shuwen, Liu, Yang, Zhou, Jizeng, Li, Chuan, Chen, Min, Lai, Liangxue, Zou, Qingjian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8621181/
https://www.ncbi.nlm.nih.gov/pubmed/34828367
http://dx.doi.org/10.3390/genes12111761
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author Cheng, Lingyin
Zhou, Xiaoqing
Zheng, Yuling
Tang, Chengcheng
Liu, Yu
Zheng, Shuwen
Liu, Yang
Zhou, Jizeng
Li, Chuan
Chen, Min
Lai, Liangxue
Zou, Qingjian
author_facet Cheng, Lingyin
Zhou, Xiaoqing
Zheng, Yuling
Tang, Chengcheng
Liu, Yu
Zheng, Shuwen
Liu, Yang
Zhou, Jizeng
Li, Chuan
Chen, Min
Lai, Liangxue
Zou, Qingjian
author_sort Cheng, Lingyin
collection PubMed
description Transcription activator-like effectors (TALEs) have been effectively used for targeted genome editing, transcriptional regulation, epigenetic modification, and locus-specific DNA imaging. However, with the advent of the clustered regularly interspaced short palindromic repeat/Cas9 system, an easy-to-use tool with the same function as TALEs, TALEs have recently been abandoned because of their complexity, time consumption, and difficult handling in common labs. Here, we described a degenerated codon-based TALE assembly system for simple, rapid, and efficient TALE assembly. TALE trimers with nonrepetitive DNA sequences were amplified by PCR and sequentially assembled via Gibson assembly. Our method is cost-effective, requires only commonly used basic molecular biology reagents, and takes only 2 h from target sequence analysis to completion. This simple, rapid, and lab-friendly TALE assembly method will restore the value of TALEs in DNA targeting.
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spelling pubmed-86211812021-11-27 Simple and Rapid Assembly of TALE Modules Based on the Degeneracy of the Codons and Trimer Repeats Cheng, Lingyin Zhou, Xiaoqing Zheng, Yuling Tang, Chengcheng Liu, Yu Zheng, Shuwen Liu, Yang Zhou, Jizeng Li, Chuan Chen, Min Lai, Liangxue Zou, Qingjian Genes (Basel) Article Transcription activator-like effectors (TALEs) have been effectively used for targeted genome editing, transcriptional regulation, epigenetic modification, and locus-specific DNA imaging. However, with the advent of the clustered regularly interspaced short palindromic repeat/Cas9 system, an easy-to-use tool with the same function as TALEs, TALEs have recently been abandoned because of their complexity, time consumption, and difficult handling in common labs. Here, we described a degenerated codon-based TALE assembly system for simple, rapid, and efficient TALE assembly. TALE trimers with nonrepetitive DNA sequences were amplified by PCR and sequentially assembled via Gibson assembly. Our method is cost-effective, requires only commonly used basic molecular biology reagents, and takes only 2 h from target sequence analysis to completion. This simple, rapid, and lab-friendly TALE assembly method will restore the value of TALEs in DNA targeting. MDPI 2021-11-05 /pmc/articles/PMC8621181/ /pubmed/34828367 http://dx.doi.org/10.3390/genes12111761 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Cheng, Lingyin
Zhou, Xiaoqing
Zheng, Yuling
Tang, Chengcheng
Liu, Yu
Zheng, Shuwen
Liu, Yang
Zhou, Jizeng
Li, Chuan
Chen, Min
Lai, Liangxue
Zou, Qingjian
Simple and Rapid Assembly of TALE Modules Based on the Degeneracy of the Codons and Trimer Repeats
title Simple and Rapid Assembly of TALE Modules Based on the Degeneracy of the Codons and Trimer Repeats
title_full Simple and Rapid Assembly of TALE Modules Based on the Degeneracy of the Codons and Trimer Repeats
title_fullStr Simple and Rapid Assembly of TALE Modules Based on the Degeneracy of the Codons and Trimer Repeats
title_full_unstemmed Simple and Rapid Assembly of TALE Modules Based on the Degeneracy of the Codons and Trimer Repeats
title_short Simple and Rapid Assembly of TALE Modules Based on the Degeneracy of the Codons and Trimer Repeats
title_sort simple and rapid assembly of tale modules based on the degeneracy of the codons and trimer repeats
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8621181/
https://www.ncbi.nlm.nih.gov/pubmed/34828367
http://dx.doi.org/10.3390/genes12111761
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