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Segmentation of Preretinal Space in Optical Coherence Tomography Images Using Deep Neural Networks

This paper proposes an efficient segmentation of the preretinal area between the inner limiting membrane (ILM) and posterior cortical vitreous (PCV) of the human eye in an image obtained with the use of optical coherence tomography (OCT). The research was carried out using a database of three-dimens...

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Autores principales: Stankiewicz, Agnieszka, Marciniak, Tomasz, Dabrowski, Adam, Stopa, Marcin, Marciniak, Elzbieta, Obara, Boguslaw
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8623441/
https://www.ncbi.nlm.nih.gov/pubmed/34833597
http://dx.doi.org/10.3390/s21227521
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author Stankiewicz, Agnieszka
Marciniak, Tomasz
Dabrowski, Adam
Stopa, Marcin
Marciniak, Elzbieta
Obara, Boguslaw
author_facet Stankiewicz, Agnieszka
Marciniak, Tomasz
Dabrowski, Adam
Stopa, Marcin
Marciniak, Elzbieta
Obara, Boguslaw
author_sort Stankiewicz, Agnieszka
collection PubMed
description This paper proposes an efficient segmentation of the preretinal area between the inner limiting membrane (ILM) and posterior cortical vitreous (PCV) of the human eye in an image obtained with the use of optical coherence tomography (OCT). The research was carried out using a database of three-dimensional OCT imaging scans obtained with the Optovue RTVue XR Avanti device. Various types of neural networks (UNet, Attention UNet, ReLayNet, LFUNet) were tested for semantic segmentation, their effectiveness was assessed using the Dice coefficient and compared to the graph theory techniques. Improvement in segmentation efficiency was achieved through the use of relative distance maps. We also show that selecting a larger kernel size for convolutional layers can improve segmentation quality depending on the neural network model. In the case of PVC, we obtain the effectiveness reaching up to [Formula: see text]. The proposed solution can be widely used to diagnose vitreomacular traction changes, which is not yet available in scientific or commercial OCT imaging solutions.
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spelling pubmed-86234412021-11-27 Segmentation of Preretinal Space in Optical Coherence Tomography Images Using Deep Neural Networks Stankiewicz, Agnieszka Marciniak, Tomasz Dabrowski, Adam Stopa, Marcin Marciniak, Elzbieta Obara, Boguslaw Sensors (Basel) Article This paper proposes an efficient segmentation of the preretinal area between the inner limiting membrane (ILM) and posterior cortical vitreous (PCV) of the human eye in an image obtained with the use of optical coherence tomography (OCT). The research was carried out using a database of three-dimensional OCT imaging scans obtained with the Optovue RTVue XR Avanti device. Various types of neural networks (UNet, Attention UNet, ReLayNet, LFUNet) were tested for semantic segmentation, their effectiveness was assessed using the Dice coefficient and compared to the graph theory techniques. Improvement in segmentation efficiency was achieved through the use of relative distance maps. We also show that selecting a larger kernel size for convolutional layers can improve segmentation quality depending on the neural network model. In the case of PVC, we obtain the effectiveness reaching up to [Formula: see text]. The proposed solution can be widely used to diagnose vitreomacular traction changes, which is not yet available in scientific or commercial OCT imaging solutions. MDPI 2021-11-12 /pmc/articles/PMC8623441/ /pubmed/34833597 http://dx.doi.org/10.3390/s21227521 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Stankiewicz, Agnieszka
Marciniak, Tomasz
Dabrowski, Adam
Stopa, Marcin
Marciniak, Elzbieta
Obara, Boguslaw
Segmentation of Preretinal Space in Optical Coherence Tomography Images Using Deep Neural Networks
title Segmentation of Preretinal Space in Optical Coherence Tomography Images Using Deep Neural Networks
title_full Segmentation of Preretinal Space in Optical Coherence Tomography Images Using Deep Neural Networks
title_fullStr Segmentation of Preretinal Space in Optical Coherence Tomography Images Using Deep Neural Networks
title_full_unstemmed Segmentation of Preretinal Space in Optical Coherence Tomography Images Using Deep Neural Networks
title_short Segmentation of Preretinal Space in Optical Coherence Tomography Images Using Deep Neural Networks
title_sort segmentation of preretinal space in optical coherence tomography images using deep neural networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8623441/
https://www.ncbi.nlm.nih.gov/pubmed/34833597
http://dx.doi.org/10.3390/s21227521
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