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An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture

Sensor technologies, such as the Global Navigation Satellite System (GNSS), produce huge amounts of data by tracking animal locations with high temporal resolution. Due to this high resolution, all animals show at least some co-occurrences, and the pure presence or absence of co-occurrences is not s...

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Autores principales: Meckbach, Cornelia, Elsholz, Sabrina, Siede, Caroline, Traulsen, Imke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8624045/
https://www.ncbi.nlm.nih.gov/pubmed/34833663
http://dx.doi.org/10.3390/s21227585
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author Meckbach, Cornelia
Elsholz, Sabrina
Siede, Caroline
Traulsen, Imke
author_facet Meckbach, Cornelia
Elsholz, Sabrina
Siede, Caroline
Traulsen, Imke
author_sort Meckbach, Cornelia
collection PubMed
description Sensor technologies, such as the Global Navigation Satellite System (GNSS), produce huge amounts of data by tracking animal locations with high temporal resolution. Due to this high resolution, all animals show at least some co-occurrences, and the pure presence or absence of co-occurrences is not satisfactory for social network construction. Further, tracked animal contacts contain noise due to measurement errors or random co-occurrences. To identify significant associations, null models are commonly used, but the determination of an appropriate null model for GNSS data by maintaining the autocorrelation of tracks is challenging, and the construction is time and memory consuming. Bioinformaticians encounter phylogenetic background and random noise on sequencing data. They estimate this noise directly on the data by using the average product correction procedure, a method applied to information-theoretic measures. Using Global Positioning System (GPS) data of heifers in a pasture, we performed a proof of concept that this approach can be transferred to animal science for social network construction. The approach outputs stable results for up to 30% missing data points, and the predicted associations were in line with those of the null models. The effect of different distance thresholds for contact definition was marginal, but animal activity strongly affected the network structure.
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spelling pubmed-86240452021-11-27 An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture Meckbach, Cornelia Elsholz, Sabrina Siede, Caroline Traulsen, Imke Sensors (Basel) Article Sensor technologies, such as the Global Navigation Satellite System (GNSS), produce huge amounts of data by tracking animal locations with high temporal resolution. Due to this high resolution, all animals show at least some co-occurrences, and the pure presence or absence of co-occurrences is not satisfactory for social network construction. Further, tracked animal contacts contain noise due to measurement errors or random co-occurrences. To identify significant associations, null models are commonly used, but the determination of an appropriate null model for GNSS data by maintaining the autocorrelation of tracks is challenging, and the construction is time and memory consuming. Bioinformaticians encounter phylogenetic background and random noise on sequencing data. They estimate this noise directly on the data by using the average product correction procedure, a method applied to information-theoretic measures. Using Global Positioning System (GPS) data of heifers in a pasture, we performed a proof of concept that this approach can be transferred to animal science for social network construction. The approach outputs stable results for up to 30% missing data points, and the predicted associations were in line with those of the null models. The effect of different distance thresholds for contact definition was marginal, but animal activity strongly affected the network structure. MDPI 2021-11-15 /pmc/articles/PMC8624045/ /pubmed/34833663 http://dx.doi.org/10.3390/s21227585 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Meckbach, Cornelia
Elsholz, Sabrina
Siede, Caroline
Traulsen, Imke
An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture
title An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture
title_full An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture
title_fullStr An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture
title_full_unstemmed An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture
title_short An Information-Theoretic Approach to Detect the Associations of GPS-Tracked Heifers in Pasture
title_sort information-theoretic approach to detect the associations of gps-tracked heifers in pasture
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8624045/
https://www.ncbi.nlm.nih.gov/pubmed/34833663
http://dx.doi.org/10.3390/s21227585
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