Cargando…

Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient

Biological soil crusts (biocrusts) are essential communities of organisms in the Icelandic soil ecosystem, as they prevent erosion and cryoturbation and provide nutrients to vascular plants. However, biocrust microbial composition in Iceland remains understudied. To address this gap in knowledge, we...

Descripción completa

Detalles Bibliográficos
Autores principales: Pushkareva, Ekaterina, Barrantes, Israel, Leinweber, Peter, Karsten, Ulf
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8624075/
https://www.ncbi.nlm.nih.gov/pubmed/34835321
http://dx.doi.org/10.3390/microorganisms9112195
_version_ 1784606084840816640
author Pushkareva, Ekaterina
Barrantes, Israel
Leinweber, Peter
Karsten, Ulf
author_facet Pushkareva, Ekaterina
Barrantes, Israel
Leinweber, Peter
Karsten, Ulf
author_sort Pushkareva, Ekaterina
collection PubMed
description Biological soil crusts (biocrusts) are essential communities of organisms in the Icelandic soil ecosystem, as they prevent erosion and cryoturbation and provide nutrients to vascular plants. However, biocrust microbial composition in Iceland remains understudied. To address this gap in knowledge, we applied high-throughput sequencing to study microbial community composition in biocrusts collected along an elevation gradient (11–157 m a.s.l.) stretching away perpendicular to the marine coast. Four groups of organisms were targeted: bacteria and cyanobacteria (16S rRNA gene), fungi (transcribed spacer region), and other eukaryotes (18S rRNA gene). The amplicon sequencing of the 16S rRNA gene revealed the dominance of Proteobacteria, Bacteroidetes, and Actinobacteria. Within the cyanobacteria, filamentous forms from the orders Synechococcales and Oscillatoriales prevailed. Furthermore, fungi in the biocrusts were dominated by Ascomycota, while the majority of reads obtained from sequencing of the 18S rRNA gene belonged to Archaeplastida. In addition, microbial photoautotrophs isolated from the biocrusts were assigned to the cyanobacterial genera Phormidesmis, Microcoleus, Wilmottia, and Oscillatoria and to two microalgal phyla Chlorophyta and Charophyta. In general, the taxonomic diversity of microorganisms in the biocrusts increased following the elevation gradient and community composition differed among the sites, suggesting that microclimatic and soil parameters might shape biocrust microbiota.
format Online
Article
Text
id pubmed-8624075
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-86240752021-11-27 Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient Pushkareva, Ekaterina Barrantes, Israel Leinweber, Peter Karsten, Ulf Microorganisms Article Biological soil crusts (biocrusts) are essential communities of organisms in the Icelandic soil ecosystem, as they prevent erosion and cryoturbation and provide nutrients to vascular plants. However, biocrust microbial composition in Iceland remains understudied. To address this gap in knowledge, we applied high-throughput sequencing to study microbial community composition in biocrusts collected along an elevation gradient (11–157 m a.s.l.) stretching away perpendicular to the marine coast. Four groups of organisms were targeted: bacteria and cyanobacteria (16S rRNA gene), fungi (transcribed spacer region), and other eukaryotes (18S rRNA gene). The amplicon sequencing of the 16S rRNA gene revealed the dominance of Proteobacteria, Bacteroidetes, and Actinobacteria. Within the cyanobacteria, filamentous forms from the orders Synechococcales and Oscillatoriales prevailed. Furthermore, fungi in the biocrusts were dominated by Ascomycota, while the majority of reads obtained from sequencing of the 18S rRNA gene belonged to Archaeplastida. In addition, microbial photoautotrophs isolated from the biocrusts were assigned to the cyanobacterial genera Phormidesmis, Microcoleus, Wilmottia, and Oscillatoria and to two microalgal phyla Chlorophyta and Charophyta. In general, the taxonomic diversity of microorganisms in the biocrusts increased following the elevation gradient and community composition differed among the sites, suggesting that microclimatic and soil parameters might shape biocrust microbiota. MDPI 2021-10-21 /pmc/articles/PMC8624075/ /pubmed/34835321 http://dx.doi.org/10.3390/microorganisms9112195 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Pushkareva, Ekaterina
Barrantes, Israel
Leinweber, Peter
Karsten, Ulf
Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient
title Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient
title_full Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient
title_fullStr Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient
title_full_unstemmed Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient
title_short Microbial Diversity in Subarctic Biocrusts from West Iceland following an Elevation Gradient
title_sort microbial diversity in subarctic biocrusts from west iceland following an elevation gradient
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8624075/
https://www.ncbi.nlm.nih.gov/pubmed/34835321
http://dx.doi.org/10.3390/microorganisms9112195
work_keys_str_mv AT pushkarevaekaterina microbialdiversityinsubarcticbiocrustsfromwesticelandfollowinganelevationgradient
AT barrantesisrael microbialdiversityinsubarcticbiocrustsfromwesticelandfollowinganelevationgradient
AT leinweberpeter microbialdiversityinsubarcticbiocrustsfromwesticelandfollowinganelevationgradient
AT karstenulf microbialdiversityinsubarcticbiocrustsfromwesticelandfollowinganelevationgradient