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Identification and Characterization of mRNA Biomarkers for Sodium Cyanide Exposure
Biomarkers in exposure assessment are defined as the quantifiable targets that indicate the exposure to hazardous chemicals and their resulting health effect. In this study, we aimed to identify, validate, and characterize the mRNA biomarker that can detect the exposure of sodium cyanide. To identif...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8624962/ https://www.ncbi.nlm.nih.gov/pubmed/34822678 http://dx.doi.org/10.3390/toxics9110288 |
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author | Kim, Min Jee, Seung-Cheol Kim, Soee Hwang, Kyung-Hwa Sung, Jung-Suk |
author_facet | Kim, Min Jee, Seung-Cheol Kim, Soee Hwang, Kyung-Hwa Sung, Jung-Suk |
author_sort | Kim, Min |
collection | PubMed |
description | Biomarkers in exposure assessment are defined as the quantifiable targets that indicate the exposure to hazardous chemicals and their resulting health effect. In this study, we aimed to identify, validate, and characterize the mRNA biomarker that can detect the exposure of sodium cyanide. To identify reliable biomarkers for sodium cyanide exposure, critical criteria were defined for candidate selection: (1) the expression level of mRNA significantly changes in response to sodium thiocyanate treatment in transcriptomics results (fold change > 2.0 or <0.50, adjusted p-value < 0.05); and (2) the mRNA level is significantly modulated by sodium cyanide exposure in both normal human lung cells and rat lung tissue. We identified the following mRNA biomarker candidates: ADCY5, ANGPTL4, CCNG2, CD9, COL1A2, DACT3, GGCX, GRB14, H1F0, HSPA1A, MAF, MAT2A, PPP1R10, and PPP4C. The expression levels of these candidates were commonly downregulated by sodium cyanide exposure both in vitro and in vivo. We functionally characterized the biomarkers and established the impact of sodium cyanide on transcriptomic profiles using in silico approaches. Our results suggest that the biomarkers may contribute to the regulation and degradation of the extracellular matrix, leading to a negative effect on surrounding lung cells. |
format | Online Article Text |
id | pubmed-8624962 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-86249622021-11-27 Identification and Characterization of mRNA Biomarkers for Sodium Cyanide Exposure Kim, Min Jee, Seung-Cheol Kim, Soee Hwang, Kyung-Hwa Sung, Jung-Suk Toxics Article Biomarkers in exposure assessment are defined as the quantifiable targets that indicate the exposure to hazardous chemicals and their resulting health effect. In this study, we aimed to identify, validate, and characterize the mRNA biomarker that can detect the exposure of sodium cyanide. To identify reliable biomarkers for sodium cyanide exposure, critical criteria were defined for candidate selection: (1) the expression level of mRNA significantly changes in response to sodium thiocyanate treatment in transcriptomics results (fold change > 2.0 or <0.50, adjusted p-value < 0.05); and (2) the mRNA level is significantly modulated by sodium cyanide exposure in both normal human lung cells and rat lung tissue. We identified the following mRNA biomarker candidates: ADCY5, ANGPTL4, CCNG2, CD9, COL1A2, DACT3, GGCX, GRB14, H1F0, HSPA1A, MAF, MAT2A, PPP1R10, and PPP4C. The expression levels of these candidates were commonly downregulated by sodium cyanide exposure both in vitro and in vivo. We functionally characterized the biomarkers and established the impact of sodium cyanide on transcriptomic profiles using in silico approaches. Our results suggest that the biomarkers may contribute to the regulation and degradation of the extracellular matrix, leading to a negative effect on surrounding lung cells. MDPI 2021-11-02 /pmc/articles/PMC8624962/ /pubmed/34822678 http://dx.doi.org/10.3390/toxics9110288 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Kim, Min Jee, Seung-Cheol Kim, Soee Hwang, Kyung-Hwa Sung, Jung-Suk Identification and Characterization of mRNA Biomarkers for Sodium Cyanide Exposure |
title | Identification and Characterization of mRNA Biomarkers for Sodium Cyanide Exposure |
title_full | Identification and Characterization of mRNA Biomarkers for Sodium Cyanide Exposure |
title_fullStr | Identification and Characterization of mRNA Biomarkers for Sodium Cyanide Exposure |
title_full_unstemmed | Identification and Characterization of mRNA Biomarkers for Sodium Cyanide Exposure |
title_short | Identification and Characterization of mRNA Biomarkers for Sodium Cyanide Exposure |
title_sort | identification and characterization of mrna biomarkers for sodium cyanide exposure |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8624962/ https://www.ncbi.nlm.nih.gov/pubmed/34822678 http://dx.doi.org/10.3390/toxics9110288 |
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