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Inter-Variability Study of COVLIAS 1.0: Hybrid Deep Learning Models for COVID-19 Lung Segmentation in Computed Tomography

Background: For COVID-19 lung severity, segmentation of lungs on computed tomography (CT) is the first crucial step. Current deep learning (DL)-based Artificial Intelligence (AI) models have a bias in the training stage of segmentation because only one set of ground truth (GT) annotations are evalua...

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Autores principales: Suri, Jasjit S., Agarwal, Sushant, Elavarthi, Pranav, Pathak, Rajesh, Ketireddy, Vedmanvitha, Columbu, Marta, Saba, Luca, Gupta, Suneet K., Faa, Gavino, Singh, Inder M., Turk, Monika, Chadha, Paramjit S., Johri, Amer M., Khanna, Narendra N., Viskovic, Klaudija, Mavrogeni, Sophie, Laird, John R., Pareek, Gyan, Miner, Martin, Sobel, David W., Balestrieri, Antonella, Sfikakis, Petros P., Tsoulfas, George, Protogerou, Athanasios, Misra, Durga Prasanna, Agarwal, Vikas, Kitas, George D., Teji, Jagjit S., Al-Maini, Mustafa, Dhanjil, Surinder K., Nicolaides, Andrew, Sharma, Aditya, Rathore, Vijay, Fatemi, Mostafa, Alizad, Azra, Krishnan, Pudukode R., Ferenc, Nagy, Ruzsa, Zoltan, Gupta, Archna, Naidu, Subbaram, Kalra, Mannudeep K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8625039/
https://www.ncbi.nlm.nih.gov/pubmed/34829372
http://dx.doi.org/10.3390/diagnostics11112025
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author Suri, Jasjit S.
Agarwal, Sushant
Elavarthi, Pranav
Pathak, Rajesh
Ketireddy, Vedmanvitha
Columbu, Marta
Saba, Luca
Gupta, Suneet K.
Faa, Gavino
Singh, Inder M.
Turk, Monika
Chadha, Paramjit S.
Johri, Amer M.
Khanna, Narendra N.
Viskovic, Klaudija
Mavrogeni, Sophie
Laird, John R.
Pareek, Gyan
Miner, Martin
Sobel, David W.
Balestrieri, Antonella
Sfikakis, Petros P.
Tsoulfas, George
Protogerou, Athanasios
Misra, Durga Prasanna
Agarwal, Vikas
Kitas, George D.
Teji, Jagjit S.
Al-Maini, Mustafa
Dhanjil, Surinder K.
Nicolaides, Andrew
Sharma, Aditya
Rathore, Vijay
Fatemi, Mostafa
Alizad, Azra
Krishnan, Pudukode R.
Ferenc, Nagy
Ruzsa, Zoltan
Gupta, Archna
Naidu, Subbaram
Kalra, Mannudeep K.
author_facet Suri, Jasjit S.
Agarwal, Sushant
Elavarthi, Pranav
Pathak, Rajesh
Ketireddy, Vedmanvitha
Columbu, Marta
Saba, Luca
Gupta, Suneet K.
Faa, Gavino
Singh, Inder M.
Turk, Monika
Chadha, Paramjit S.
Johri, Amer M.
Khanna, Narendra N.
Viskovic, Klaudija
Mavrogeni, Sophie
Laird, John R.
Pareek, Gyan
Miner, Martin
Sobel, David W.
Balestrieri, Antonella
Sfikakis, Petros P.
Tsoulfas, George
Protogerou, Athanasios
Misra, Durga Prasanna
Agarwal, Vikas
Kitas, George D.
Teji, Jagjit S.
Al-Maini, Mustafa
Dhanjil, Surinder K.
Nicolaides, Andrew
Sharma, Aditya
Rathore, Vijay
Fatemi, Mostafa
Alizad, Azra
Krishnan, Pudukode R.
Ferenc, Nagy
Ruzsa, Zoltan
Gupta, Archna
Naidu, Subbaram
Kalra, Mannudeep K.
author_sort Suri, Jasjit S.
collection PubMed
description Background: For COVID-19 lung severity, segmentation of lungs on computed tomography (CT) is the first crucial step. Current deep learning (DL)-based Artificial Intelligence (AI) models have a bias in the training stage of segmentation because only one set of ground truth (GT) annotations are evaluated. We propose a robust and stable inter-variability analysis of CT lung segmentation in COVID-19 to avoid the effect of bias. Methodology: The proposed inter-variability study consists of two GT tracers for lung segmentation on chest CT. Three AI models, PSP Net, VGG-SegNet, and ResNet-SegNet, were trained using GT annotations. We hypothesized that if AI models are trained on the GT tracings from multiple experience levels, and if the AI performance on the test data between these AI models is within the 5% range, one can consider such an AI model robust and unbiased. The K5 protocol (training to testing: 80%:20%) was adapted. Ten kinds of metrics were used for performance evaluation. Results: The database consisted of 5000 CT chest images from 72 COVID-19-infected patients. By computing the coefficient of correlations (CC) between the output of the two AI models trained corresponding to the two GT tracers, computing their differences in their CC, and repeating the process for all three AI-models, we show the differences as 0%, 0.51%, and 2.04% (all < 5%), thereby validating the hypothesis. The performance was comparable; however, it had the following order: ResNet-SegNet > PSP Net > VGG-SegNet. Conclusions: The AI models were clinically robust and stable during the inter-variability analysis on the CT lung segmentation on COVID-19 patients.
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spelling pubmed-86250392021-11-27 Inter-Variability Study of COVLIAS 1.0: Hybrid Deep Learning Models for COVID-19 Lung Segmentation in Computed Tomography Suri, Jasjit S. Agarwal, Sushant Elavarthi, Pranav Pathak, Rajesh Ketireddy, Vedmanvitha Columbu, Marta Saba, Luca Gupta, Suneet K. Faa, Gavino Singh, Inder M. Turk, Monika Chadha, Paramjit S. Johri, Amer M. Khanna, Narendra N. Viskovic, Klaudija Mavrogeni, Sophie Laird, John R. Pareek, Gyan Miner, Martin Sobel, David W. Balestrieri, Antonella Sfikakis, Petros P. Tsoulfas, George Protogerou, Athanasios Misra, Durga Prasanna Agarwal, Vikas Kitas, George D. Teji, Jagjit S. Al-Maini, Mustafa Dhanjil, Surinder K. Nicolaides, Andrew Sharma, Aditya Rathore, Vijay Fatemi, Mostafa Alizad, Azra Krishnan, Pudukode R. Ferenc, Nagy Ruzsa, Zoltan Gupta, Archna Naidu, Subbaram Kalra, Mannudeep K. Diagnostics (Basel) Article Background: For COVID-19 lung severity, segmentation of lungs on computed tomography (CT) is the first crucial step. Current deep learning (DL)-based Artificial Intelligence (AI) models have a bias in the training stage of segmentation because only one set of ground truth (GT) annotations are evaluated. We propose a robust and stable inter-variability analysis of CT lung segmentation in COVID-19 to avoid the effect of bias. Methodology: The proposed inter-variability study consists of two GT tracers for lung segmentation on chest CT. Three AI models, PSP Net, VGG-SegNet, and ResNet-SegNet, were trained using GT annotations. We hypothesized that if AI models are trained on the GT tracings from multiple experience levels, and if the AI performance on the test data between these AI models is within the 5% range, one can consider such an AI model robust and unbiased. The K5 protocol (training to testing: 80%:20%) was adapted. Ten kinds of metrics were used for performance evaluation. Results: The database consisted of 5000 CT chest images from 72 COVID-19-infected patients. By computing the coefficient of correlations (CC) between the output of the two AI models trained corresponding to the two GT tracers, computing their differences in their CC, and repeating the process for all three AI-models, we show the differences as 0%, 0.51%, and 2.04% (all < 5%), thereby validating the hypothesis. The performance was comparable; however, it had the following order: ResNet-SegNet > PSP Net > VGG-SegNet. Conclusions: The AI models were clinically robust and stable during the inter-variability analysis on the CT lung segmentation on COVID-19 patients. MDPI 2021-11-01 /pmc/articles/PMC8625039/ /pubmed/34829372 http://dx.doi.org/10.3390/diagnostics11112025 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Suri, Jasjit S.
Agarwal, Sushant
Elavarthi, Pranav
Pathak, Rajesh
Ketireddy, Vedmanvitha
Columbu, Marta
Saba, Luca
Gupta, Suneet K.
Faa, Gavino
Singh, Inder M.
Turk, Monika
Chadha, Paramjit S.
Johri, Amer M.
Khanna, Narendra N.
Viskovic, Klaudija
Mavrogeni, Sophie
Laird, John R.
Pareek, Gyan
Miner, Martin
Sobel, David W.
Balestrieri, Antonella
Sfikakis, Petros P.
Tsoulfas, George
Protogerou, Athanasios
Misra, Durga Prasanna
Agarwal, Vikas
Kitas, George D.
Teji, Jagjit S.
Al-Maini, Mustafa
Dhanjil, Surinder K.
Nicolaides, Andrew
Sharma, Aditya
Rathore, Vijay
Fatemi, Mostafa
Alizad, Azra
Krishnan, Pudukode R.
Ferenc, Nagy
Ruzsa, Zoltan
Gupta, Archna
Naidu, Subbaram
Kalra, Mannudeep K.
Inter-Variability Study of COVLIAS 1.0: Hybrid Deep Learning Models for COVID-19 Lung Segmentation in Computed Tomography
title Inter-Variability Study of COVLIAS 1.0: Hybrid Deep Learning Models for COVID-19 Lung Segmentation in Computed Tomography
title_full Inter-Variability Study of COVLIAS 1.0: Hybrid Deep Learning Models for COVID-19 Lung Segmentation in Computed Tomography
title_fullStr Inter-Variability Study of COVLIAS 1.0: Hybrid Deep Learning Models for COVID-19 Lung Segmentation in Computed Tomography
title_full_unstemmed Inter-Variability Study of COVLIAS 1.0: Hybrid Deep Learning Models for COVID-19 Lung Segmentation in Computed Tomography
title_short Inter-Variability Study of COVLIAS 1.0: Hybrid Deep Learning Models for COVID-19 Lung Segmentation in Computed Tomography
title_sort inter-variability study of covlias 1.0: hybrid deep learning models for covid-19 lung segmentation in computed tomography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8625039/
https://www.ncbi.nlm.nih.gov/pubmed/34829372
http://dx.doi.org/10.3390/diagnostics11112025
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