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Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family
The CHYR (CHY ZINC-FINGER AND RING FINGER PROTEIN) proteins have been functionally characterized in iron regulation and stress response in Arabidopsis, rice and Populus. However, their roles in soybean have not yet been systematically investigated. Here, in this study, 16 GmCHYR genes with conserved...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8625759/ https://www.ncbi.nlm.nih.gov/pubmed/34830077 http://dx.doi.org/10.3390/ijms222212192 |
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author | Jia, Bowei Wang, Yan Zhang, Dajian Li, Wanhong Cui, Hongli Jin, Jun Cai, Xiaoxi Shen, Yang Wu, Shengyang Guo, Yongxia Sun, Mingzhe Sun, Xiaoli |
author_facet | Jia, Bowei Wang, Yan Zhang, Dajian Li, Wanhong Cui, Hongli Jin, Jun Cai, Xiaoxi Shen, Yang Wu, Shengyang Guo, Yongxia Sun, Mingzhe Sun, Xiaoli |
author_sort | Jia, Bowei |
collection | PubMed |
description | The CHYR (CHY ZINC-FINGER AND RING FINGER PROTEIN) proteins have been functionally characterized in iron regulation and stress response in Arabidopsis, rice and Populus. However, their roles in soybean have not yet been systematically investigated. Here, in this study, 16 GmCHYR genes with conserved Zinc_ribbon, CHY zinc finger and Ring finger domains were obtained and divided into three groups. Moreover, additional 2–3 hemerythrin domains could be found in the N terminus of Group III. Phylogenetic and homology analysis of CHYRs in green plants indicated that three groups might originate from different ancestors. Expectedly, GmCHYR genes shared similar conserved domains/motifs distribution within the same group. Gene expression analysis uncovered their special expression patterns in different soybean tissues/organs and under various abiotic stresses. Group I and II members were mainly involved in salt and alkaline stresses. The expression of Group III members was induced/repressed by dehydration, salt and alkaline stresses, indicating their diverse roles in response to abiotic stress. In conclusion, our work will benefit for further revealing the biological roles of GmCHYRs. |
format | Online Article Text |
id | pubmed-8625759 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-86257592021-11-27 Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family Jia, Bowei Wang, Yan Zhang, Dajian Li, Wanhong Cui, Hongli Jin, Jun Cai, Xiaoxi Shen, Yang Wu, Shengyang Guo, Yongxia Sun, Mingzhe Sun, Xiaoli Int J Mol Sci Article The CHYR (CHY ZINC-FINGER AND RING FINGER PROTEIN) proteins have been functionally characterized in iron regulation and stress response in Arabidopsis, rice and Populus. However, their roles in soybean have not yet been systematically investigated. Here, in this study, 16 GmCHYR genes with conserved Zinc_ribbon, CHY zinc finger and Ring finger domains were obtained and divided into three groups. Moreover, additional 2–3 hemerythrin domains could be found in the N terminus of Group III. Phylogenetic and homology analysis of CHYRs in green plants indicated that three groups might originate from different ancestors. Expectedly, GmCHYR genes shared similar conserved domains/motifs distribution within the same group. Gene expression analysis uncovered their special expression patterns in different soybean tissues/organs and under various abiotic stresses. Group I and II members were mainly involved in salt and alkaline stresses. The expression of Group III members was induced/repressed by dehydration, salt and alkaline stresses, indicating their diverse roles in response to abiotic stress. In conclusion, our work will benefit for further revealing the biological roles of GmCHYRs. MDPI 2021-11-11 /pmc/articles/PMC8625759/ /pubmed/34830077 http://dx.doi.org/10.3390/ijms222212192 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Jia, Bowei Wang, Yan Zhang, Dajian Li, Wanhong Cui, Hongli Jin, Jun Cai, Xiaoxi Shen, Yang Wu, Shengyang Guo, Yongxia Sun, Mingzhe Sun, Xiaoli Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family |
title | Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family |
title_full | Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family |
title_fullStr | Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family |
title_full_unstemmed | Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family |
title_short | Genome-Wide Identification, Characterization and Expression Analysis of Soybean CHYR Gene Family |
title_sort | genome-wide identification, characterization and expression analysis of soybean chyr gene family |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8625759/ https://www.ncbi.nlm.nih.gov/pubmed/34830077 http://dx.doi.org/10.3390/ijms222212192 |
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