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Bayesian probabilistic assignment of chemical shifts in organic solids

A prerequisite for NMR studies of organic materials is assigning each experimental chemical shift to a set of geometrically equivalent nuclei. Obtaining the assignment experimentally can be challenging and typically requires time-consuming multidimensional correlation experiments. An alternative sol...

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Autores principales: Cordova, Manuel, Balodis, Martins, Simões de Almeida, Bruno, Ceriotti, Michele, Emsley, Lyndon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Association for the Advancement of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8626066/
https://www.ncbi.nlm.nih.gov/pubmed/34826232
http://dx.doi.org/10.1126/sciadv.abk2341
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author Cordova, Manuel
Balodis, Martins
Simões de Almeida, Bruno
Ceriotti, Michele
Emsley, Lyndon
author_facet Cordova, Manuel
Balodis, Martins
Simões de Almeida, Bruno
Ceriotti, Michele
Emsley, Lyndon
author_sort Cordova, Manuel
collection PubMed
description A prerequisite for NMR studies of organic materials is assigning each experimental chemical shift to a set of geometrically equivalent nuclei. Obtaining the assignment experimentally can be challenging and typically requires time-consuming multidimensional correlation experiments. An alternative solution for determining the assignment involves statistical analysis of experimental chemical shift databases, but no such database exists for molecular solids. Here, by combining the Cambridge Structural Database with a machine learning model of chemical shifts, we construct a statistical basis for probabilistic chemical shift assignment of organic crystals by calculating shifts for more than 200,000 compounds, enabling the probabilistic assignment of organic crystals directly from their two-dimensional chemical structure. The approach is demonstrated with the (13)C and (1)H assignment of 11 molecular solids with experimental shifts and benchmarked on 100 crystals using predicted shifts. The correct assignment was found among the two most probable assignments in more than 80% of cases.
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spelling pubmed-86260662021-12-06 Bayesian probabilistic assignment of chemical shifts in organic solids Cordova, Manuel Balodis, Martins Simões de Almeida, Bruno Ceriotti, Michele Emsley, Lyndon Sci Adv Physical and Materials Sciences A prerequisite for NMR studies of organic materials is assigning each experimental chemical shift to a set of geometrically equivalent nuclei. Obtaining the assignment experimentally can be challenging and typically requires time-consuming multidimensional correlation experiments. An alternative solution for determining the assignment involves statistical analysis of experimental chemical shift databases, but no such database exists for molecular solids. Here, by combining the Cambridge Structural Database with a machine learning model of chemical shifts, we construct a statistical basis for probabilistic chemical shift assignment of organic crystals by calculating shifts for more than 200,000 compounds, enabling the probabilistic assignment of organic crystals directly from their two-dimensional chemical structure. The approach is demonstrated with the (13)C and (1)H assignment of 11 molecular solids with experimental shifts and benchmarked on 100 crystals using predicted shifts. The correct assignment was found among the two most probable assignments in more than 80% of cases. American Association for the Advancement of Science 2021-11-26 /pmc/articles/PMC8626066/ /pubmed/34826232 http://dx.doi.org/10.1126/sciadv.abk2341 Text en Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited.
spellingShingle Physical and Materials Sciences
Cordova, Manuel
Balodis, Martins
Simões de Almeida, Bruno
Ceriotti, Michele
Emsley, Lyndon
Bayesian probabilistic assignment of chemical shifts in organic solids
title Bayesian probabilistic assignment of chemical shifts in organic solids
title_full Bayesian probabilistic assignment of chemical shifts in organic solids
title_fullStr Bayesian probabilistic assignment of chemical shifts in organic solids
title_full_unstemmed Bayesian probabilistic assignment of chemical shifts in organic solids
title_short Bayesian probabilistic assignment of chemical shifts in organic solids
title_sort bayesian probabilistic assignment of chemical shifts in organic solids
topic Physical and Materials Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8626066/
https://www.ncbi.nlm.nih.gov/pubmed/34826232
http://dx.doi.org/10.1126/sciadv.abk2341
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