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A parameter-free statistical test for neuronal responsiveness
Neurophysiological studies depend on a reliable quantification of whether and when a neuron responds to stimulation. Simple methods to determine responsiveness require arbitrary parameter choices, such as binning size, while more advanced model-based methods require fitting and hyperparameter tuning...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8626082/ https://www.ncbi.nlm.nih.gov/pubmed/34570697 http://dx.doi.org/10.7554/eLife.71969 |
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author | Montijn, Jorrit S Seignette, Koen Howlett, Marcus H Cazemier, J Leonie Kamermans, Maarten Levelt, Christiaan N Heimel, J Alexander |
author_facet | Montijn, Jorrit S Seignette, Koen Howlett, Marcus H Cazemier, J Leonie Kamermans, Maarten Levelt, Christiaan N Heimel, J Alexander |
author_sort | Montijn, Jorrit S |
collection | PubMed |
description | Neurophysiological studies depend on a reliable quantification of whether and when a neuron responds to stimulation. Simple methods to determine responsiveness require arbitrary parameter choices, such as binning size, while more advanced model-based methods require fitting and hyperparameter tuning. These parameter choices can change the results, which invites bad statistical practice and reduces the replicability. New recording techniques that yield increasingly large numbers of cells would benefit from a test for cell-inclusion that requires no manual curation. Here, we present the parameter-free ZETA-test, which outperforms t-tests, ANOVAs, and renewal-process-based methods by including more cells at a similar false-positive rate. We show that our procedure works across brain regions and recording techniques, including calcium imaging and Neuropixels data. Furthermore, in illustration of the method, we show in mouse visual cortex that (1) visuomotor-mismatch and spatial location are encoded by different neuronal subpopulations and (2) optogenetic stimulation of VIP cells leads to early inhibition and subsequent disinhibition. |
format | Online Article Text |
id | pubmed-8626082 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-86260822021-11-29 A parameter-free statistical test for neuronal responsiveness Montijn, Jorrit S Seignette, Koen Howlett, Marcus H Cazemier, J Leonie Kamermans, Maarten Levelt, Christiaan N Heimel, J Alexander eLife Neuroscience Neurophysiological studies depend on a reliable quantification of whether and when a neuron responds to stimulation. Simple methods to determine responsiveness require arbitrary parameter choices, such as binning size, while more advanced model-based methods require fitting and hyperparameter tuning. These parameter choices can change the results, which invites bad statistical practice and reduces the replicability. New recording techniques that yield increasingly large numbers of cells would benefit from a test for cell-inclusion that requires no manual curation. Here, we present the parameter-free ZETA-test, which outperforms t-tests, ANOVAs, and renewal-process-based methods by including more cells at a similar false-positive rate. We show that our procedure works across brain regions and recording techniques, including calcium imaging and Neuropixels data. Furthermore, in illustration of the method, we show in mouse visual cortex that (1) visuomotor-mismatch and spatial location are encoded by different neuronal subpopulations and (2) optogenetic stimulation of VIP cells leads to early inhibition and subsequent disinhibition. eLife Sciences Publications, Ltd 2021-09-27 /pmc/articles/PMC8626082/ /pubmed/34570697 http://dx.doi.org/10.7554/eLife.71969 Text en © 2021, Montijn et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Neuroscience Montijn, Jorrit S Seignette, Koen Howlett, Marcus H Cazemier, J Leonie Kamermans, Maarten Levelt, Christiaan N Heimel, J Alexander A parameter-free statistical test for neuronal responsiveness |
title | A parameter-free statistical test for neuronal responsiveness |
title_full | A parameter-free statistical test for neuronal responsiveness |
title_fullStr | A parameter-free statistical test for neuronal responsiveness |
title_full_unstemmed | A parameter-free statistical test for neuronal responsiveness |
title_short | A parameter-free statistical test for neuronal responsiveness |
title_sort | parameter-free statistical test for neuronal responsiveness |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8626082/ https://www.ncbi.nlm.nih.gov/pubmed/34570697 http://dx.doi.org/10.7554/eLife.71969 |
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