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NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block
We intended to explore the potential molecular mechanisms underlying the cardiac conduction block inducted by urea transporter (UT)-B deletion at the transcriptome level. The heart tissues were harvested from UT-B null mice and age-matched wild-type mice for lncRNA sequencing analysis. Based on the...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8627919/ https://www.ncbi.nlm.nih.gov/pubmed/34901457 http://dx.doi.org/10.1515/biol-2021-0106 |
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author | Lv, Xuejiao Sun, Yuxin Tan, Wenxi Liu, Yang Wen, Naiyan Fu, Shuang Yu, Lanying Liu, Tiantian Qi, Xiaocui Shu, Nanqi Du, Yanwei Zhang, Wenfeng Meng, Yan |
author_facet | Lv, Xuejiao Sun, Yuxin Tan, Wenxi Liu, Yang Wen, Naiyan Fu, Shuang Yu, Lanying Liu, Tiantian Qi, Xiaocui Shu, Nanqi Du, Yanwei Zhang, Wenfeng Meng, Yan |
author_sort | Lv, Xuejiao |
collection | PubMed |
description | We intended to explore the potential molecular mechanisms underlying the cardiac conduction block inducted by urea transporter (UT)-B deletion at the transcriptome level. The heart tissues were harvested from UT-B null mice and age-matched wild-type mice for lncRNA sequencing analysis. Based on the sequencing data, the differentially expressed mRNAs (DEMs) and lncRNAs (DELs) between UT-B knockout and control groups were identified, followed by function analysis and mRNA–lncRNA co-expression analysis. The miRNAs were predicted, and then the competing endogenous RNA (ceRNA) network was constructed. UT-B deletion results in the aberrant expression of 588 lncRNAs and 194 mRNAs. These DEMs were significantly enriched in the inflammation-related pathway. A lncRNA–mRNA co-expression network and a ceRNA network were constructed on the basis of the DEMs and DELs. The complement 7 (C7)–NONMMUT137216.1 co-expression pair had the highest correlation coefficient in the co-expression network. NONMMUT140591.1 had the highest degree in the ceRNA network and was involved in the ceRNA of NONMMUT140591.1-mmu-miR-298-5p-Gata5 (GATA binding protein 5). UT-B deletion may promote cardiac conduction block via inflammatory process. The ceRNA NONMMUT140591.1-mmu-miR-298-5p-Gata5 may be a potential molecular mechanism of UT-B knockout-induced cardiac conduction block. |
format | Online Article Text |
id | pubmed-8627919 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-86279192021-12-10 NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block Lv, Xuejiao Sun, Yuxin Tan, Wenxi Liu, Yang Wen, Naiyan Fu, Shuang Yu, Lanying Liu, Tiantian Qi, Xiaocui Shu, Nanqi Du, Yanwei Zhang, Wenfeng Meng, Yan Open Life Sci Research Article We intended to explore the potential molecular mechanisms underlying the cardiac conduction block inducted by urea transporter (UT)-B deletion at the transcriptome level. The heart tissues were harvested from UT-B null mice and age-matched wild-type mice for lncRNA sequencing analysis. Based on the sequencing data, the differentially expressed mRNAs (DEMs) and lncRNAs (DELs) between UT-B knockout and control groups were identified, followed by function analysis and mRNA–lncRNA co-expression analysis. The miRNAs were predicted, and then the competing endogenous RNA (ceRNA) network was constructed. UT-B deletion results in the aberrant expression of 588 lncRNAs and 194 mRNAs. These DEMs were significantly enriched in the inflammation-related pathway. A lncRNA–mRNA co-expression network and a ceRNA network were constructed on the basis of the DEMs and DELs. The complement 7 (C7)–NONMMUT137216.1 co-expression pair had the highest correlation coefficient in the co-expression network. NONMMUT140591.1 had the highest degree in the ceRNA network and was involved in the ceRNA of NONMMUT140591.1-mmu-miR-298-5p-Gata5 (GATA binding protein 5). UT-B deletion may promote cardiac conduction block via inflammatory process. The ceRNA NONMMUT140591.1-mmu-miR-298-5p-Gata5 may be a potential molecular mechanism of UT-B knockout-induced cardiac conduction block. De Gruyter 2021-11-27 /pmc/articles/PMC8627919/ /pubmed/34901457 http://dx.doi.org/10.1515/biol-2021-0106 Text en © 2021 Xuejiao Lv et al., published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Research Article Lv, Xuejiao Sun, Yuxin Tan, Wenxi Liu, Yang Wen, Naiyan Fu, Shuang Yu, Lanying Liu, Tiantian Qi, Xiaocui Shu, Nanqi Du, Yanwei Zhang, Wenfeng Meng, Yan NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block |
title | NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block |
title_full | NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block |
title_fullStr | NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block |
title_full_unstemmed | NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block |
title_short | NONMMUT140591.1 may serve as a ceRNA to regulate Gata5 in UT-B knockout-induced cardiac conduction block |
title_sort | nonmmut140591.1 may serve as a cerna to regulate gata5 in ut-b knockout-induced cardiac conduction block |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8627919/ https://www.ncbi.nlm.nih.gov/pubmed/34901457 http://dx.doi.org/10.1515/biol-2021-0106 |
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