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Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models

[Image: see text] We report a comprehensive study of the efficacy of least-squares fitting of multidimensional spectra to generalized Kubo line-shape models and introduce a novel least-squares fitting metric, termed the scale invariant gradient norm (SIGN), that enables a highly reliable and versati...

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Autores principales: Robben, Kevin C., Cheatum, Christopher M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2021
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8630800/
https://www.ncbi.nlm.nih.gov/pubmed/34783568
http://dx.doi.org/10.1021/acs.jpcb.1c08764
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author Robben, Kevin C.
Cheatum, Christopher M.
author_facet Robben, Kevin C.
Cheatum, Christopher M.
author_sort Robben, Kevin C.
collection PubMed
description [Image: see text] We report a comprehensive study of the efficacy of least-squares fitting of multidimensional spectra to generalized Kubo line-shape models and introduce a novel least-squares fitting metric, termed the scale invariant gradient norm (SIGN), that enables a highly reliable and versatile algorithm. The precision of dephasing parameters is between 8× and 50× better for nonlinear model fitting compared to that for the centerline-slope (CLS) method, which effectively increases data acquisition efficiency by 1–2 orders of magnitude. Whereas the CLS method requires sequential fitting of both the nonlinear and linear spectra, our model fitting algorithm only requires nonlinear spectra but accurately predicts the linear spectrum. We show an experimental example in which the CLS time constants differ by 60% for independent measurements of the same system, while the Kubo time constants differ by only 10% for model fitting. This suggests that model fitting is a far more robust method of measuring spectral diffusion than the CLS method, which is more susceptible to structured residual signals that are not removable by pure solvent subtraction. Statistical analysis of the CLS method reveals a fundamental oversight in accounting for the propagation of uncertainty by Kubo time constants in the process of fitting to the linear absorption spectrum. A standalone desktop app and source code for the least-squares fitting algorithm are freely available, with example line-shape models and data. We have written the MATLAB source code in a generic framework where users may supply custom line-shape models. Using this application, a standard desktop fits a 12-parameter generalized Kubo model to a 10(6) data-point spectrum in a few minutes.
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spelling pubmed-86308002021-12-01 Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models Robben, Kevin C. Cheatum, Christopher M. J Phys Chem B [Image: see text] We report a comprehensive study of the efficacy of least-squares fitting of multidimensional spectra to generalized Kubo line-shape models and introduce a novel least-squares fitting metric, termed the scale invariant gradient norm (SIGN), that enables a highly reliable and versatile algorithm. The precision of dephasing parameters is between 8× and 50× better for nonlinear model fitting compared to that for the centerline-slope (CLS) method, which effectively increases data acquisition efficiency by 1–2 orders of magnitude. Whereas the CLS method requires sequential fitting of both the nonlinear and linear spectra, our model fitting algorithm only requires nonlinear spectra but accurately predicts the linear spectrum. We show an experimental example in which the CLS time constants differ by 60% for independent measurements of the same system, while the Kubo time constants differ by only 10% for model fitting. This suggests that model fitting is a far more robust method of measuring spectral diffusion than the CLS method, which is more susceptible to structured residual signals that are not removable by pure solvent subtraction. Statistical analysis of the CLS method reveals a fundamental oversight in accounting for the propagation of uncertainty by Kubo time constants in the process of fitting to the linear absorption spectrum. A standalone desktop app and source code for the least-squares fitting algorithm are freely available, with example line-shape models and data. We have written the MATLAB source code in a generic framework where users may supply custom line-shape models. Using this application, a standard desktop fits a 12-parameter generalized Kubo model to a 10(6) data-point spectrum in a few minutes. American Chemical Society 2021-11-16 2021-11-25 /pmc/articles/PMC8630800/ /pubmed/34783568 http://dx.doi.org/10.1021/acs.jpcb.1c08764 Text en © 2021 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Robben, Kevin C.
Cheatum, Christopher M.
Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models
title Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models
title_full Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models
title_fullStr Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models
title_full_unstemmed Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models
title_short Least-Squares Fitting of Multidimensional Spectra to Kubo Line-Shape Models
title_sort least-squares fitting of multidimensional spectra to kubo line-shape models
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8630800/
https://www.ncbi.nlm.nih.gov/pubmed/34783568
http://dx.doi.org/10.1021/acs.jpcb.1c08764
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