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Genome-wide analysis of bZIP, BBR, and BZR transcription factors in Triticum aestivum

Transcription factors are regulatory proteins known to modulate gene expression. These are the critical component of signaling pathways and help in mitigating various developmental and stress responses. Among them, bZIP, BBR, and BZR transcription factor families are well known to play a crucial rol...

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Autores principales: Ahad, Arzoo, Aslam, Roohi, Gul, Alvina, Amir, Rabia, Munir, Faiza, Batool, Tuba Sharf, Ilyas, Mahnoor, Sarwar, Muhammad, Nadeem, Muhammad Azhar, Baloch, Faheem Shehzad, Fiaz, Sajid, Zia, Muhammad Abu Bakar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8631640/
https://www.ncbi.nlm.nih.gov/pubmed/34847173
http://dx.doi.org/10.1371/journal.pone.0259404
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author Ahad, Arzoo
Aslam, Roohi
Gul, Alvina
Amir, Rabia
Munir, Faiza
Batool, Tuba Sharf
Ilyas, Mahnoor
Sarwar, Muhammad
Nadeem, Muhammad Azhar
Baloch, Faheem Shehzad
Fiaz, Sajid
Zia, Muhammad Abu Bakar
author_facet Ahad, Arzoo
Aslam, Roohi
Gul, Alvina
Amir, Rabia
Munir, Faiza
Batool, Tuba Sharf
Ilyas, Mahnoor
Sarwar, Muhammad
Nadeem, Muhammad Azhar
Baloch, Faheem Shehzad
Fiaz, Sajid
Zia, Muhammad Abu Bakar
author_sort Ahad, Arzoo
collection PubMed
description Transcription factors are regulatory proteins known to modulate gene expression. These are the critical component of signaling pathways and help in mitigating various developmental and stress responses. Among them, bZIP, BBR, and BZR transcription factor families are well known to play a crucial role in regulating growth, development, and defense responses. However, limited data is available on these transcription factors in Triticum aestivum. In this study, bZIP, BBR, and BZR sequences from Brachypodium distachyon, Oryza sativa, Oryza barthii, Oryza brachyantha, T. aestivum, Triticum urartu, Sorghum bicolor, Zea mays were retrieved, and dendrograms were constructed to analyze the evolutionary relatedness among them. The sequences clustered into one group indicated a degree of evolutionary correlation highlighting the common lineage of cereal grains. This analysis also exhibited that these genes were highly conserved among studied monocots emphasizing their common ancestry. Furthermore, these transcription factor genes were evaluated for envisaging conserved motifs, gene structure, and subcellular localization in T. aestivum. This comprehensive computational analysis has provided an insight into transcription factor evolution that can also be useful in developing approaches for future functional characterization of these genes in T. aestivum. Furthermore, the data generated can be beneficial in future for genetic manipulation of economically important plants.
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spelling pubmed-86316402021-12-01 Genome-wide analysis of bZIP, BBR, and BZR transcription factors in Triticum aestivum Ahad, Arzoo Aslam, Roohi Gul, Alvina Amir, Rabia Munir, Faiza Batool, Tuba Sharf Ilyas, Mahnoor Sarwar, Muhammad Nadeem, Muhammad Azhar Baloch, Faheem Shehzad Fiaz, Sajid Zia, Muhammad Abu Bakar PLoS One Research Article Transcription factors are regulatory proteins known to modulate gene expression. These are the critical component of signaling pathways and help in mitigating various developmental and stress responses. Among them, bZIP, BBR, and BZR transcription factor families are well known to play a crucial role in regulating growth, development, and defense responses. However, limited data is available on these transcription factors in Triticum aestivum. In this study, bZIP, BBR, and BZR sequences from Brachypodium distachyon, Oryza sativa, Oryza barthii, Oryza brachyantha, T. aestivum, Triticum urartu, Sorghum bicolor, Zea mays were retrieved, and dendrograms were constructed to analyze the evolutionary relatedness among them. The sequences clustered into one group indicated a degree of evolutionary correlation highlighting the common lineage of cereal grains. This analysis also exhibited that these genes were highly conserved among studied monocots emphasizing their common ancestry. Furthermore, these transcription factor genes were evaluated for envisaging conserved motifs, gene structure, and subcellular localization in T. aestivum. This comprehensive computational analysis has provided an insight into transcription factor evolution that can also be useful in developing approaches for future functional characterization of these genes in T. aestivum. Furthermore, the data generated can be beneficial in future for genetic manipulation of economically important plants. Public Library of Science 2021-11-30 /pmc/articles/PMC8631640/ /pubmed/34847173 http://dx.doi.org/10.1371/journal.pone.0259404 Text en © 2021 Ahad et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ahad, Arzoo
Aslam, Roohi
Gul, Alvina
Amir, Rabia
Munir, Faiza
Batool, Tuba Sharf
Ilyas, Mahnoor
Sarwar, Muhammad
Nadeem, Muhammad Azhar
Baloch, Faheem Shehzad
Fiaz, Sajid
Zia, Muhammad Abu Bakar
Genome-wide analysis of bZIP, BBR, and BZR transcription factors in Triticum aestivum
title Genome-wide analysis of bZIP, BBR, and BZR transcription factors in Triticum aestivum
title_full Genome-wide analysis of bZIP, BBR, and BZR transcription factors in Triticum aestivum
title_fullStr Genome-wide analysis of bZIP, BBR, and BZR transcription factors in Triticum aestivum
title_full_unstemmed Genome-wide analysis of bZIP, BBR, and BZR transcription factors in Triticum aestivum
title_short Genome-wide analysis of bZIP, BBR, and BZR transcription factors in Triticum aestivum
title_sort genome-wide analysis of bzip, bbr, and bzr transcription factors in triticum aestivum
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8631640/
https://www.ncbi.nlm.nih.gov/pubmed/34847173
http://dx.doi.org/10.1371/journal.pone.0259404
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