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M6ADD: a comprehensive database of m(6)A modifications in diseases

N6-methyladenosine (m(6)A) modification is an important regulatory factor affecting diseases, including multiple cancers and it is a developing direction for targeted disease therapy. Here, we present the M6ADD (m(6)A-diseases database) database, a public data resource containing manually curated da...

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Autores principales: Zhou, Dianshuang, Wang, Hongli, Bi, Fanqi, Xing, Jie, Gu, Yue, Wang, Cong, Zhang, Menyan, Huang, Yan, Zeng, Jiaqi, Wu, Qiong, Zhang, Yan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8632072/
https://www.ncbi.nlm.nih.gov/pubmed/33906563
http://dx.doi.org/10.1080/15476286.2021.1913302
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author Zhou, Dianshuang
Wang, Hongli
Bi, Fanqi
Xing, Jie
Gu, Yue
Wang, Cong
Zhang, Menyan
Huang, Yan
Zeng, Jiaqi
Wu, Qiong
Zhang, Yan
author_facet Zhou, Dianshuang
Wang, Hongli
Bi, Fanqi
Xing, Jie
Gu, Yue
Wang, Cong
Zhang, Menyan
Huang, Yan
Zeng, Jiaqi
Wu, Qiong
Zhang, Yan
author_sort Zhou, Dianshuang
collection PubMed
description N6-methyladenosine (m(6)A) modification is an important regulatory factor affecting diseases, including multiple cancers and it is a developing direction for targeted disease therapy. Here, we present the M6ADD (m(6)A-diseases database) database, a public data resource containing manually curated data on potential m(6)A-disease associations for which some experimental evidence is available; the related high-throughput sequencing data are also provided and analysed by using different computational methods. To give researchers a tool to query the m6A modification data, the M6ADD was designed as a web-based comprehensive resource focusing on the collection, storage and online analysis of m6A modifications, aimed at exploring the associations between m6A modification and gene disorders and diseases. The M6ADD includes 222 experimentally confirmed m(6)A-disease associations, involving 59 diseases from a review of more than 2000 published papers. The M6ADD also includes 409,229 m(6)A-disease associations obtained by computational and statistical methods from 30 high-throughput sequencing datasets. In addition, we provide data on 5239 potential m(6)A regulatory proteins related to 24 cancers based on network analysis prediction methods. In addition, we have developed a tool to explore the function of m(6)A-modified genes through the protein–protein interaction networks. The M6ADD can be accessed at http://m6add.edbc.org/.
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spelling pubmed-86320722021-12-01 M6ADD: a comprehensive database of m(6)A modifications in diseases Zhou, Dianshuang Wang, Hongli Bi, Fanqi Xing, Jie Gu, Yue Wang, Cong Zhang, Menyan Huang, Yan Zeng, Jiaqi Wu, Qiong Zhang, Yan RNA Biol Research Paper N6-methyladenosine (m(6)A) modification is an important regulatory factor affecting diseases, including multiple cancers and it is a developing direction for targeted disease therapy. Here, we present the M6ADD (m(6)A-diseases database) database, a public data resource containing manually curated data on potential m(6)A-disease associations for which some experimental evidence is available; the related high-throughput sequencing data are also provided and analysed by using different computational methods. To give researchers a tool to query the m6A modification data, the M6ADD was designed as a web-based comprehensive resource focusing on the collection, storage and online analysis of m6A modifications, aimed at exploring the associations between m6A modification and gene disorders and diseases. The M6ADD includes 222 experimentally confirmed m(6)A-disease associations, involving 59 diseases from a review of more than 2000 published papers. The M6ADD also includes 409,229 m(6)A-disease associations obtained by computational and statistical methods from 30 high-throughput sequencing datasets. In addition, we provide data on 5239 potential m(6)A regulatory proteins related to 24 cancers based on network analysis prediction methods. In addition, we have developed a tool to explore the function of m(6)A-modified genes through the protein–protein interaction networks. The M6ADD can be accessed at http://m6add.edbc.org/. Taylor & Francis 2021-04-27 /pmc/articles/PMC8632072/ /pubmed/33906563 http://dx.doi.org/10.1080/15476286.2021.1913302 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives License (http://creativecommons.org/licenses/by-nc-nd/4.0/ (https://creativecommons.org/licenses/by-nc-nd/4.0/) ), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited, and is not altered, transformed, or built upon in any way.
spellingShingle Research Paper
Zhou, Dianshuang
Wang, Hongli
Bi, Fanqi
Xing, Jie
Gu, Yue
Wang, Cong
Zhang, Menyan
Huang, Yan
Zeng, Jiaqi
Wu, Qiong
Zhang, Yan
M6ADD: a comprehensive database of m(6)A modifications in diseases
title M6ADD: a comprehensive database of m(6)A modifications in diseases
title_full M6ADD: a comprehensive database of m(6)A modifications in diseases
title_fullStr M6ADD: a comprehensive database of m(6)A modifications in diseases
title_full_unstemmed M6ADD: a comprehensive database of m(6)A modifications in diseases
title_short M6ADD: a comprehensive database of m(6)A modifications in diseases
title_sort m6add: a comprehensive database of m(6)a modifications in diseases
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8632072/
https://www.ncbi.nlm.nih.gov/pubmed/33906563
http://dx.doi.org/10.1080/15476286.2021.1913302
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