Cargando…

An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism

Liver cancer is a highly malignant tumor. Notably, recent studies have found that long non-coding RNAs (lncRNAs) play a prominent role in the prognosis of patients with liver cancer. Herein, we attempted to construct an lncRNA model to accurately predict the survival rate in liver cancer. Based on T...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Hao, Liu, Renzheng, Sun, Lin, Hu, Xiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8633432/
https://www.ncbi.nlm.nih.gov/pubmed/34869585
http://dx.doi.org/10.3389/fmolb.2021.749313
_version_ 1784607927033659392
author Zhang, Hao
Liu, Renzheng
Sun, Lin
Hu, Xiao
author_facet Zhang, Hao
Liu, Renzheng
Sun, Lin
Hu, Xiao
author_sort Zhang, Hao
collection PubMed
description Liver cancer is a highly malignant tumor. Notably, recent studies have found that long non-coding RNAs (lncRNAs) play a prominent role in the prognosis of patients with liver cancer. Herein, we attempted to construct an lncRNA model to accurately predict the survival rate in liver cancer. Based on The Cancer Genome Atlas (TCGA) database, we first identified 1066 lncRNAs with differential expression. The patient data obtained from TCGA were divided into the experimental group and the verification group. According to the difference in lncRNAs, we used single-factor and multi-factor Cox regression to select the genes needed to build the model in the experimental group, which were verified in the verification group. The results showed that the model could accurately predict the survival rate of patients in the high and low risk groups. The reliability of the model was also confirmed by the area under the receiver operating characteristic curve. Our model is significantly correlated with different clinicopathological features. Finally, we built a ceRNA network based on lncRNAs, which was used to display miRNAs and mRNAs related to lncRNAs. In summary, we constructed an lncRNA model to predict the survival rate of patients with hepatocellular carcinoma.
format Online
Article
Text
id pubmed-8633432
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-86334322021-12-02 An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism Zhang, Hao Liu, Renzheng Sun, Lin Hu, Xiao Front Mol Biosci Molecular Biosciences Liver cancer is a highly malignant tumor. Notably, recent studies have found that long non-coding RNAs (lncRNAs) play a prominent role in the prognosis of patients with liver cancer. Herein, we attempted to construct an lncRNA model to accurately predict the survival rate in liver cancer. Based on The Cancer Genome Atlas (TCGA) database, we first identified 1066 lncRNAs with differential expression. The patient data obtained from TCGA were divided into the experimental group and the verification group. According to the difference in lncRNAs, we used single-factor and multi-factor Cox regression to select the genes needed to build the model in the experimental group, which were verified in the verification group. The results showed that the model could accurately predict the survival rate of patients in the high and low risk groups. The reliability of the model was also confirmed by the area under the receiver operating characteristic curve. Our model is significantly correlated with different clinicopathological features. Finally, we built a ceRNA network based on lncRNAs, which was used to display miRNAs and mRNAs related to lncRNAs. In summary, we constructed an lncRNA model to predict the survival rate of patients with hepatocellular carcinoma. Frontiers Media S.A. 2021-11-12 /pmc/articles/PMC8633432/ /pubmed/34869585 http://dx.doi.org/10.3389/fmolb.2021.749313 Text en Copyright © 2021 Zhang, Liu, Sun and Hu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Molecular Biosciences
Zhang, Hao
Liu, Renzheng
Sun, Lin
Hu, Xiao
An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism
title An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism
title_full An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism
title_fullStr An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism
title_full_unstemmed An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism
title_short An lncRNA Model for Predicting the Prognosis of Hepatocellular Carcinoma Patients and ceRNA Mechanism
title_sort lncrna model for predicting the prognosis of hepatocellular carcinoma patients and cerna mechanism
topic Molecular Biosciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8633432/
https://www.ncbi.nlm.nih.gov/pubmed/34869585
http://dx.doi.org/10.3389/fmolb.2021.749313
work_keys_str_mv AT zhanghao anlncrnamodelforpredictingtheprognosisofhepatocellularcarcinomapatientsandcernamechanism
AT liurenzheng anlncrnamodelforpredictingtheprognosisofhepatocellularcarcinomapatientsandcernamechanism
AT sunlin anlncrnamodelforpredictingtheprognosisofhepatocellularcarcinomapatientsandcernamechanism
AT huxiao anlncrnamodelforpredictingtheprognosisofhepatocellularcarcinomapatientsandcernamechanism
AT zhanghao lncrnamodelforpredictingtheprognosisofhepatocellularcarcinomapatientsandcernamechanism
AT liurenzheng lncrnamodelforpredictingtheprognosisofhepatocellularcarcinomapatientsandcernamechanism
AT sunlin lncrnamodelforpredictingtheprognosisofhepatocellularcarcinomapatientsandcernamechanism
AT huxiao lncrnamodelforpredictingtheprognosisofhepatocellularcarcinomapatientsandcernamechanism