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Extracting social determinants of health from electronic health records using natural language processing: a systematic review

OBJECTIVE: Social determinants of health (SDoH) are nonclinical dispositions that impact patient health risks and clinical outcomes. Leveraging SDoH in clinical decision-making can potentially improve diagnosis, treatment planning, and patient outcomes. Despite increased interest in capturing SDoH i...

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Autores principales: Patra, Braja G, Sharma, Mohit M, Vekaria, Veer, Adekkanattu, Prakash, Patterson, Olga V, Glicksberg, Benjamin, Lepow, Lauren A, Ryu, Euijung, Biernacka, Joanna M, Furmanchuk, Al’ona, George, Thomas J, Hogan, William, Wu, Yonghui, Yang, Xi, Bian, Jiang, Weissman, Myrna, Wickramaratne, Priya, Mann, J John, Olfson, Mark, Campion, Thomas R, Weiner, Mark, Pathak, Jyotishman
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8633615/
https://www.ncbi.nlm.nih.gov/pubmed/34613399
http://dx.doi.org/10.1093/jamia/ocab170
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author Patra, Braja G
Sharma, Mohit M
Vekaria, Veer
Adekkanattu, Prakash
Patterson, Olga V
Glicksberg, Benjamin
Lepow, Lauren A
Ryu, Euijung
Biernacka, Joanna M
Furmanchuk, Al’ona
George, Thomas J
Hogan, William
Wu, Yonghui
Yang, Xi
Bian, Jiang
Weissman, Myrna
Wickramaratne, Priya
Mann, J John
Olfson, Mark
Campion, Thomas R
Weiner, Mark
Pathak, Jyotishman
author_facet Patra, Braja G
Sharma, Mohit M
Vekaria, Veer
Adekkanattu, Prakash
Patterson, Olga V
Glicksberg, Benjamin
Lepow, Lauren A
Ryu, Euijung
Biernacka, Joanna M
Furmanchuk, Al’ona
George, Thomas J
Hogan, William
Wu, Yonghui
Yang, Xi
Bian, Jiang
Weissman, Myrna
Wickramaratne, Priya
Mann, J John
Olfson, Mark
Campion, Thomas R
Weiner, Mark
Pathak, Jyotishman
author_sort Patra, Braja G
collection PubMed
description OBJECTIVE: Social determinants of health (SDoH) are nonclinical dispositions that impact patient health risks and clinical outcomes. Leveraging SDoH in clinical decision-making can potentially improve diagnosis, treatment planning, and patient outcomes. Despite increased interest in capturing SDoH in electronic health records (EHRs), such information is typically locked in unstructured clinical notes. Natural language processing (NLP) is the key technology to extract SDoH information from clinical text and expand its utility in patient care and research. This article presents a systematic review of the state-of-the-art NLP approaches and tools that focus on identifying and extracting SDoH data from unstructured clinical text in EHRs. MATERIALS AND METHODS: A broad literature search was conducted in February 2021 using 3 scholarly databases (ACL Anthology, PubMed, and Scopus) following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. A total of 6402 publications were initially identified, and after applying the study inclusion criteria, 82 publications were selected for the final review. RESULTS: Smoking status (n = 27), substance use (n = 21), homelessness (n = 20), and alcohol use (n = 15) are the most frequently studied SDoH categories. Homelessness (n = 7) and other less-studied SDoH (eg, education, financial problems, social isolation and support, family problems) are mostly identified using rule-based approaches. In contrast, machine learning approaches are popular for identifying smoking status (n = 13), substance use (n = 9), and alcohol use (n = 9). CONCLUSION: NLP offers significant potential to extract SDoH data from narrative clinical notes, which in turn can aid in the development of screening tools, risk prediction models, and clinical decision support systems.
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spelling pubmed-86336152021-12-01 Extracting social determinants of health from electronic health records using natural language processing: a systematic review Patra, Braja G Sharma, Mohit M Vekaria, Veer Adekkanattu, Prakash Patterson, Olga V Glicksberg, Benjamin Lepow, Lauren A Ryu, Euijung Biernacka, Joanna M Furmanchuk, Al’ona George, Thomas J Hogan, William Wu, Yonghui Yang, Xi Bian, Jiang Weissman, Myrna Wickramaratne, Priya Mann, J John Olfson, Mark Campion, Thomas R Weiner, Mark Pathak, Jyotishman J Am Med Inform Assoc Reviews OBJECTIVE: Social determinants of health (SDoH) are nonclinical dispositions that impact patient health risks and clinical outcomes. Leveraging SDoH in clinical decision-making can potentially improve diagnosis, treatment planning, and patient outcomes. Despite increased interest in capturing SDoH in electronic health records (EHRs), such information is typically locked in unstructured clinical notes. Natural language processing (NLP) is the key technology to extract SDoH information from clinical text and expand its utility in patient care and research. This article presents a systematic review of the state-of-the-art NLP approaches and tools that focus on identifying and extracting SDoH data from unstructured clinical text in EHRs. MATERIALS AND METHODS: A broad literature search was conducted in February 2021 using 3 scholarly databases (ACL Anthology, PubMed, and Scopus) following Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. A total of 6402 publications were initially identified, and after applying the study inclusion criteria, 82 publications were selected for the final review. RESULTS: Smoking status (n = 27), substance use (n = 21), homelessness (n = 20), and alcohol use (n = 15) are the most frequently studied SDoH categories. Homelessness (n = 7) and other less-studied SDoH (eg, education, financial problems, social isolation and support, family problems) are mostly identified using rule-based approaches. In contrast, machine learning approaches are popular for identifying smoking status (n = 13), substance use (n = 9), and alcohol use (n = 9). CONCLUSION: NLP offers significant potential to extract SDoH data from narrative clinical notes, which in turn can aid in the development of screening tools, risk prediction models, and clinical decision support systems. Oxford University Press 2021-10-06 /pmc/articles/PMC8633615/ /pubmed/34613399 http://dx.doi.org/10.1093/jamia/ocab170 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of the American Medical Informatics Association. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Reviews
Patra, Braja G
Sharma, Mohit M
Vekaria, Veer
Adekkanattu, Prakash
Patterson, Olga V
Glicksberg, Benjamin
Lepow, Lauren A
Ryu, Euijung
Biernacka, Joanna M
Furmanchuk, Al’ona
George, Thomas J
Hogan, William
Wu, Yonghui
Yang, Xi
Bian, Jiang
Weissman, Myrna
Wickramaratne, Priya
Mann, J John
Olfson, Mark
Campion, Thomas R
Weiner, Mark
Pathak, Jyotishman
Extracting social determinants of health from electronic health records using natural language processing: a systematic review
title Extracting social determinants of health from electronic health records using natural language processing: a systematic review
title_full Extracting social determinants of health from electronic health records using natural language processing: a systematic review
title_fullStr Extracting social determinants of health from electronic health records using natural language processing: a systematic review
title_full_unstemmed Extracting social determinants of health from electronic health records using natural language processing: a systematic review
title_short Extracting social determinants of health from electronic health records using natural language processing: a systematic review
title_sort extracting social determinants of health from electronic health records using natural language processing: a systematic review
topic Reviews
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8633615/
https://www.ncbi.nlm.nih.gov/pubmed/34613399
http://dx.doi.org/10.1093/jamia/ocab170
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