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Long-Read Assembly and Annotation of the Parasitoid Wasp Muscidifurax raptorellus, a Biological Control Agent for Filth Flies
The parasitoid wasp Muscidifurax raptorellus (Hymenoptera: Pteromalidae) is a gregarious species that has received extensive attention for its potential in biological pest control against house fly, stable fly, and other filth flies. It has a high reproductive capacity and can be reared easily. Howe...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8633841/ https://www.ncbi.nlm.nih.gov/pubmed/34868218 http://dx.doi.org/10.3389/fgene.2021.748135 |
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author | Xiong, Xiao Kelkar, Yogeshwar D Geden, Chris J Zhang, Chao Wang, Yidong Jongepier, Evelien Martinson, Ellen O. Verhulst, Eveline C Gadau, Jürgen Werren, John H Wang, Xu |
author_facet | Xiong, Xiao Kelkar, Yogeshwar D Geden, Chris J Zhang, Chao Wang, Yidong Jongepier, Evelien Martinson, Ellen O. Verhulst, Eveline C Gadau, Jürgen Werren, John H Wang, Xu |
author_sort | Xiong, Xiao |
collection | PubMed |
description | The parasitoid wasp Muscidifurax raptorellus (Hymenoptera: Pteromalidae) is a gregarious species that has received extensive attention for its potential in biological pest control against house fly, stable fly, and other filth flies. It has a high reproductive capacity and can be reared easily. However, genome assembly is not available for M. raptorellus or any other species in this genus. Previously, we assembled a complete circular mitochondrial genome with a length of 24,717 bp. Here, we assembled and annotated a high-quality nuclear genome of M. raptorellus, using a combination of long-read (104× genome coverage) and short-read (326× genome coverage) sequencing technologies. The assembled genome size is 314 Mbp in 226 contigs, with a 97.9% BUSCO completeness score and a contig N50 of 4.67 Mb, suggesting excellent continuity of this assembly. Our assembly builds the foundation for comparative and evolutionary genomic analysis in the genus of Muscidifurax and possible future biocontrol applications. |
format | Online Article Text |
id | pubmed-8633841 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86338412021-12-02 Long-Read Assembly and Annotation of the Parasitoid Wasp Muscidifurax raptorellus, a Biological Control Agent for Filth Flies Xiong, Xiao Kelkar, Yogeshwar D Geden, Chris J Zhang, Chao Wang, Yidong Jongepier, Evelien Martinson, Ellen O. Verhulst, Eveline C Gadau, Jürgen Werren, John H Wang, Xu Front Genet Genetics The parasitoid wasp Muscidifurax raptorellus (Hymenoptera: Pteromalidae) is a gregarious species that has received extensive attention for its potential in biological pest control against house fly, stable fly, and other filth flies. It has a high reproductive capacity and can be reared easily. However, genome assembly is not available for M. raptorellus or any other species in this genus. Previously, we assembled a complete circular mitochondrial genome with a length of 24,717 bp. Here, we assembled and annotated a high-quality nuclear genome of M. raptorellus, using a combination of long-read (104× genome coverage) and short-read (326× genome coverage) sequencing technologies. The assembled genome size is 314 Mbp in 226 contigs, with a 97.9% BUSCO completeness score and a contig N50 of 4.67 Mb, suggesting excellent continuity of this assembly. Our assembly builds the foundation for comparative and evolutionary genomic analysis in the genus of Muscidifurax and possible future biocontrol applications. Frontiers Media S.A. 2021-11-12 /pmc/articles/PMC8633841/ /pubmed/34868218 http://dx.doi.org/10.3389/fgene.2021.748135 Text en Copyright © 2021 Xiong, Kelkar, Geden, Zhang, Wang, Jongepier, Martinson, Verhulst, Gadau, Werren and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Genetics Xiong, Xiao Kelkar, Yogeshwar D Geden, Chris J Zhang, Chao Wang, Yidong Jongepier, Evelien Martinson, Ellen O. Verhulst, Eveline C Gadau, Jürgen Werren, John H Wang, Xu Long-Read Assembly and Annotation of the Parasitoid Wasp Muscidifurax raptorellus, a Biological Control Agent for Filth Flies |
title | Long-Read Assembly and Annotation of the Parasitoid Wasp Muscidifurax raptorellus, a Biological Control Agent for Filth Flies |
title_full | Long-Read Assembly and Annotation of the Parasitoid Wasp Muscidifurax raptorellus, a Biological Control Agent for Filth Flies |
title_fullStr | Long-Read Assembly and Annotation of the Parasitoid Wasp Muscidifurax raptorellus, a Biological Control Agent for Filth Flies |
title_full_unstemmed | Long-Read Assembly and Annotation of the Parasitoid Wasp Muscidifurax raptorellus, a Biological Control Agent for Filth Flies |
title_short | Long-Read Assembly and Annotation of the Parasitoid Wasp Muscidifurax raptorellus, a Biological Control Agent for Filth Flies |
title_sort | long-read assembly and annotation of the parasitoid wasp muscidifurax raptorellus, a biological control agent for filth flies |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8633841/ https://www.ncbi.nlm.nih.gov/pubmed/34868218 http://dx.doi.org/10.3389/fgene.2021.748135 |
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