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The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)

Hordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H....

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Autores principales: Yu, Xinlian, Li, Xin, Yao, Xiaohua, Yao, Youhua, Bai, Yixiong, An, Likun, Wu, Kunlun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635538/
https://www.ncbi.nlm.nih.gov/pubmed/34869884
http://dx.doi.org/10.1080/23802359.2021.2003260
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author Yu, Xinlian
Li, Xin
Yao, Xiaohua
Yao, Youhua
Bai, Yixiong
An, Likun
Wu, Kunlun
author_facet Yu, Xinlian
Li, Xin
Yao, Xiaohua
Yao, Youhua
Bai, Yixiong
An, Likun
Wu, Kunlun
author_sort Yu, Xinlian
collection PubMed
description Hordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H. distichon was sequenced and analyzed: the size of the chloroplast genome is 136,462 bp in length, including a large single copy region (LSC) of 80,597 bp, a small single copy region (SSC) of 12,701 bp, and a pair of inverted repeated regions (IR) of 21,582 bp; the H. distichon chloroplast genome encodes 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes; the overall GC-content of the chloroplast genome was 38.32%, with the LSC, SSC, and IR regions being 36.31%, 32.33%, and 43.83%, respectively. Phylogenetic analysis based on 32 species with the maximum likelihood (ML) method indicated that H. distichon was closely related to Hordeum vulgare.
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spelling pubmed-86355382021-12-02 The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) Yu, Xinlian Li, Xin Yao, Xiaohua Yao, Youhua Bai, Yixiong An, Likun Wu, Kunlun Mitochondrial DNA B Resour Mitogenome Announcement Hordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H. distichon was sequenced and analyzed: the size of the chloroplast genome is 136,462 bp in length, including a large single copy region (LSC) of 80,597 bp, a small single copy region (SSC) of 12,701 bp, and a pair of inverted repeated regions (IR) of 21,582 bp; the H. distichon chloroplast genome encodes 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes; the overall GC-content of the chloroplast genome was 38.32%, with the LSC, SSC, and IR regions being 36.31%, 32.33%, and 43.83%, respectively. Phylogenetic analysis based on 32 species with the maximum likelihood (ML) method indicated that H. distichon was closely related to Hordeum vulgare. Taylor & Francis 2021-11-23 /pmc/articles/PMC8635538/ /pubmed/34869884 http://dx.doi.org/10.1080/23802359.2021.2003260 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yu, Xinlian
Li, Xin
Yao, Xiaohua
Yao, Youhua
Bai, Yixiong
An, Likun
Wu, Kunlun
The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)
title The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)
title_full The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)
title_fullStr The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)
title_full_unstemmed The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)
title_short The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)
title_sort complete chloroplast genome sequence of hordeum distichon (poales: poaceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635538/
https://www.ncbi.nlm.nih.gov/pubmed/34869884
http://dx.doi.org/10.1080/23802359.2021.2003260
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