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The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae)
Hordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H....
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635538/ https://www.ncbi.nlm.nih.gov/pubmed/34869884 http://dx.doi.org/10.1080/23802359.2021.2003260 |
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author | Yu, Xinlian Li, Xin Yao, Xiaohua Yao, Youhua Bai, Yixiong An, Likun Wu, Kunlun |
author_facet | Yu, Xinlian Li, Xin Yao, Xiaohua Yao, Youhua Bai, Yixiong An, Likun Wu, Kunlun |
author_sort | Yu, Xinlian |
collection | PubMed |
description | Hordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H. distichon was sequenced and analyzed: the size of the chloroplast genome is 136,462 bp in length, including a large single copy region (LSC) of 80,597 bp, a small single copy region (SSC) of 12,701 bp, and a pair of inverted repeated regions (IR) of 21,582 bp; the H. distichon chloroplast genome encodes 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes; the overall GC-content of the chloroplast genome was 38.32%, with the LSC, SSC, and IR regions being 36.31%, 32.33%, and 43.83%, respectively. Phylogenetic analysis based on 32 species with the maximum likelihood (ML) method indicated that H. distichon was closely related to Hordeum vulgare. |
format | Online Article Text |
id | pubmed-8635538 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-86355382021-12-02 The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) Yu, Xinlian Li, Xin Yao, Xiaohua Yao, Youhua Bai, Yixiong An, Likun Wu, Kunlun Mitochondrial DNA B Resour Mitogenome Announcement Hordeum distichon (H. distichon) is a two-row cultivated barley used as food and as a feed crop. Chloroplast genome is an excellent way to study the genetic structure and evolutionary process of natural population of plant species in recent years. In this study, the complete chloroplast genome of H. distichon was sequenced and analyzed: the size of the chloroplast genome is 136,462 bp in length, including a large single copy region (LSC) of 80,597 bp, a small single copy region (SSC) of 12,701 bp, and a pair of inverted repeated regions (IR) of 21,582 bp; the H. distichon chloroplast genome encodes 129 genes, including 83 protein-coding genes, 38 tRNA genes, and eight rRNA genes; the overall GC-content of the chloroplast genome was 38.32%, with the LSC, SSC, and IR regions being 36.31%, 32.33%, and 43.83%, respectively. Phylogenetic analysis based on 32 species with the maximum likelihood (ML) method indicated that H. distichon was closely related to Hordeum vulgare. Taylor & Francis 2021-11-23 /pmc/articles/PMC8635538/ /pubmed/34869884 http://dx.doi.org/10.1080/23802359.2021.2003260 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yu, Xinlian Li, Xin Yao, Xiaohua Yao, Youhua Bai, Yixiong An, Likun Wu, Kunlun The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
title | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
title_full | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
title_fullStr | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
title_full_unstemmed | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
title_short | The complete chloroplast genome sequence of Hordeum distichon (Poales: Poaceae) |
title_sort | complete chloroplast genome sequence of hordeum distichon (poales: poaceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635538/ https://www.ncbi.nlm.nih.gov/pubmed/34869884 http://dx.doi.org/10.1080/23802359.2021.2003260 |
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