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The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder

Vitex negundo var. heterophylla (Franch.) Rehder is a common small shrub in northern China. In order to study the fine nectar characteristics and water and soil conservation characteristics of V. negundo, the analysis of chloroplast genome would provide theoretical basis for economic development and...

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Autores principales: Zheng, Guangshun, Li, Jianbo, Diao, Shu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635545/
https://www.ncbi.nlm.nih.gov/pubmed/34869894
http://dx.doi.org/10.1080/23802359.2021.2005479
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author Zheng, Guangshun
Li, Jianbo
Diao, Shu
author_facet Zheng, Guangshun
Li, Jianbo
Diao, Shu
author_sort Zheng, Guangshun
collection PubMed
description Vitex negundo var. heterophylla (Franch.) Rehder is a common small shrub in northern China. In order to study the fine nectar characteristics and water and soil conservation characteristics of V. negundo, the analysis of chloroplast genome would provide theoretical basis for economic development and germplasm utilization of V. negundo. The chloroplast genome sequence (accession number MW366787) of V. negundo was accepted by high-throughput sequencing technology using a plant from Jiulongshan, Mentougou District, Beijing, China. The total length of the chloroplast genome is 154,438 bp, and the A, T, C and G content of the whole genome is 30.48, 31.26, 19.42, and 18.84%, respectively. The phylogenetic analysis of 16 Verbenaceae plants (including V. negundo) with Arabidopsis thaliana as the outgroup was carried out by the maximum likelihood method; and the result shows that V. negundo is relatively closed to Vitex rotundifolia.
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spelling pubmed-86355452021-12-02 The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder Zheng, Guangshun Li, Jianbo Diao, Shu Mitochondrial DNA B Resour Mitogenome Announcement Vitex negundo var. heterophylla (Franch.) Rehder is a common small shrub in northern China. In order to study the fine nectar characteristics and water and soil conservation characteristics of V. negundo, the analysis of chloroplast genome would provide theoretical basis for economic development and germplasm utilization of V. negundo. The chloroplast genome sequence (accession number MW366787) of V. negundo was accepted by high-throughput sequencing technology using a plant from Jiulongshan, Mentougou District, Beijing, China. The total length of the chloroplast genome is 154,438 bp, and the A, T, C and G content of the whole genome is 30.48, 31.26, 19.42, and 18.84%, respectively. The phylogenetic analysis of 16 Verbenaceae plants (including V. negundo) with Arabidopsis thaliana as the outgroup was carried out by the maximum likelihood method; and the result shows that V. negundo is relatively closed to Vitex rotundifolia. Taylor & Francis 2021-11-29 /pmc/articles/PMC8635545/ /pubmed/34869894 http://dx.doi.org/10.1080/23802359.2021.2005479 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Zheng, Guangshun
Li, Jianbo
Diao, Shu
The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder
title The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder
title_full The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder
title_fullStr The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder
title_full_unstemmed The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder
title_short The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder
title_sort chloroplast genome sequence and characteristic analysis of vitex negundo var. heterophylla (franch.) rehder
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635545/
https://www.ncbi.nlm.nih.gov/pubmed/34869894
http://dx.doi.org/10.1080/23802359.2021.2005479
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