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The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder
Vitex negundo var. heterophylla (Franch.) Rehder is a common small shrub in northern China. In order to study the fine nectar characteristics and water and soil conservation characteristics of V. negundo, the analysis of chloroplast genome would provide theoretical basis for economic development and...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635545/ https://www.ncbi.nlm.nih.gov/pubmed/34869894 http://dx.doi.org/10.1080/23802359.2021.2005479 |
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author | Zheng, Guangshun Li, Jianbo Diao, Shu |
author_facet | Zheng, Guangshun Li, Jianbo Diao, Shu |
author_sort | Zheng, Guangshun |
collection | PubMed |
description | Vitex negundo var. heterophylla (Franch.) Rehder is a common small shrub in northern China. In order to study the fine nectar characteristics and water and soil conservation characteristics of V. negundo, the analysis of chloroplast genome would provide theoretical basis for economic development and germplasm utilization of V. negundo. The chloroplast genome sequence (accession number MW366787) of V. negundo was accepted by high-throughput sequencing technology using a plant from Jiulongshan, Mentougou District, Beijing, China. The total length of the chloroplast genome is 154,438 bp, and the A, T, C and G content of the whole genome is 30.48, 31.26, 19.42, and 18.84%, respectively. The phylogenetic analysis of 16 Verbenaceae plants (including V. negundo) with Arabidopsis thaliana as the outgroup was carried out by the maximum likelihood method; and the result shows that V. negundo is relatively closed to Vitex rotundifolia. |
format | Online Article Text |
id | pubmed-8635545 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-86355452021-12-02 The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder Zheng, Guangshun Li, Jianbo Diao, Shu Mitochondrial DNA B Resour Mitogenome Announcement Vitex negundo var. heterophylla (Franch.) Rehder is a common small shrub in northern China. In order to study the fine nectar characteristics and water and soil conservation characteristics of V. negundo, the analysis of chloroplast genome would provide theoretical basis for economic development and germplasm utilization of V. negundo. The chloroplast genome sequence (accession number MW366787) of V. negundo was accepted by high-throughput sequencing technology using a plant from Jiulongshan, Mentougou District, Beijing, China. The total length of the chloroplast genome is 154,438 bp, and the A, T, C and G content of the whole genome is 30.48, 31.26, 19.42, and 18.84%, respectively. The phylogenetic analysis of 16 Verbenaceae plants (including V. negundo) with Arabidopsis thaliana as the outgroup was carried out by the maximum likelihood method; and the result shows that V. negundo is relatively closed to Vitex rotundifolia. Taylor & Francis 2021-11-29 /pmc/articles/PMC8635545/ /pubmed/34869894 http://dx.doi.org/10.1080/23802359.2021.2005479 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zheng, Guangshun Li, Jianbo Diao, Shu The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder |
title | The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder |
title_full | The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder |
title_fullStr | The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder |
title_full_unstemmed | The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder |
title_short | The chloroplast genome sequence and characteristic analysis of Vitex negundo var. heterophylla (Franch.) Rehder |
title_sort | chloroplast genome sequence and characteristic analysis of vitex negundo var. heterophylla (franch.) rehder |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635545/ https://www.ncbi.nlm.nih.gov/pubmed/34869894 http://dx.doi.org/10.1080/23802359.2021.2005479 |
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