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The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis
Platanus × hispanica is a tree species with high ornamental value, which complete chloroplast(cp) genome was sequenced, assembled and annotated. The chloroplast genome of P. hispanica was 161,717 bp in length, including a large single copy (LSC) region of 92,106, a small single copy (SSC) region of...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635631/ https://www.ncbi.nlm.nih.gov/pubmed/34869877 http://dx.doi.org/10.1080/23802359.2021.2002204 |
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author | Zhao, Dan Hou, Zhu |
author_facet | Zhao, Dan Hou, Zhu |
author_sort | Zhao, Dan |
collection | PubMed |
description | Platanus × hispanica is a tree species with high ornamental value, which complete chloroplast(cp) genome was sequenced, assembled and annotated. The chloroplast genome of P. hispanica was 161,717 bp in length, including a large single copy (LSC) region of 92,106, a small single copy (SSC) region of 19,449 bp, and two inverted repeat (IR) regions of 25,081 bp. The GC contents of LSC, SSC, IR, and whole genome are 36.2, 33.0, 43.4, and 38.0%, respectively. There are 131 genes annotated, including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis revealed that P. hispanica was most related to Platanus occidentalis as a sister group with 100% bootstrap support. The complete chloroplast genome sequences of P. hispanica will provide valuable genomic information to further illuminate phylogenetic classification of Platanus genus. |
format | Online Article Text |
id | pubmed-8635631 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-86356312021-12-02 The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis Zhao, Dan Hou, Zhu Mitochondrial DNA B Resour Mitogenome Announcement Platanus × hispanica is a tree species with high ornamental value, which complete chloroplast(cp) genome was sequenced, assembled and annotated. The chloroplast genome of P. hispanica was 161,717 bp in length, including a large single copy (LSC) region of 92,106, a small single copy (SSC) region of 19,449 bp, and two inverted repeat (IR) regions of 25,081 bp. The GC contents of LSC, SSC, IR, and whole genome are 36.2, 33.0, 43.4, and 38.0%, respectively. There are 131 genes annotated, including 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The phylogenetic analysis revealed that P. hispanica was most related to Platanus occidentalis as a sister group with 100% bootstrap support. The complete chloroplast genome sequences of P. hispanica will provide valuable genomic information to further illuminate phylogenetic classification of Platanus genus. Taylor & Francis 2021-11-24 /pmc/articles/PMC8635631/ /pubmed/34869877 http://dx.doi.org/10.1080/23802359.2021.2002204 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Zhao, Dan Hou, Zhu The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis |
title | The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis |
title_full | The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis |
title_fullStr | The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis |
title_full_unstemmed | The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis |
title_short | The complete chloroplast genome sequence of Platanus × hispanica from Sichuan province, China, a medicinal plant and phylogenetic analysis |
title_sort | complete chloroplast genome sequence of platanus × hispanica from sichuan province, china, a medicinal plant and phylogenetic analysis |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635631/ https://www.ncbi.nlm.nih.gov/pubmed/34869877 http://dx.doi.org/10.1080/23802359.2021.2002204 |
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