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A machine learning model for nowcasting epidemic incidence
Due to delay in reporting, the daily national and statewide COVID-19 incidence counts are often unreliable and need to be estimated from recent data. This process is known in economics as nowcasting. We describe in this paper a simple random forest statistical model for nowcasting the COVID-19 daily...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635898/ https://www.ncbi.nlm.nih.gov/pubmed/34848217 http://dx.doi.org/10.1016/j.mbs.2021.108677 |
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author | Sahai, Saumya Yashmohini Gurukar, Saket KhudaBukhsh, Wasiur R. Parthasarathy, Srinivasan Rempała, Grzegorz A. |
author_facet | Sahai, Saumya Yashmohini Gurukar, Saket KhudaBukhsh, Wasiur R. Parthasarathy, Srinivasan Rempała, Grzegorz A. |
author_sort | Sahai, Saumya Yashmohini |
collection | PubMed |
description | Due to delay in reporting, the daily national and statewide COVID-19 incidence counts are often unreliable and need to be estimated from recent data. This process is known in economics as nowcasting. We describe in this paper a simple random forest statistical model for nowcasting the COVID-19 daily new infection counts based on historic data along with a set of simple covariates, such as the currently reported infection counts, day of the week, and time since first reporting. We apply the model to adjust the daily infection counts in Ohio, and show that the predictions from this simple data-driven method compare favorably both in quality and computational burden to those obtained from the state-of-the-art hierarchical Bayesian model employing a complex statistical algorithm. The interactive notebook for performing nowcasting is available online at https://tinyurl.com/simpleMLnowcasting. |
format | Online Article Text |
id | pubmed-8635898 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Elsevier Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86358982021-12-02 A machine learning model for nowcasting epidemic incidence Sahai, Saumya Yashmohini Gurukar, Saket KhudaBukhsh, Wasiur R. Parthasarathy, Srinivasan Rempała, Grzegorz A. Math Biosci Original Research Article Due to delay in reporting, the daily national and statewide COVID-19 incidence counts are often unreliable and need to be estimated from recent data. This process is known in economics as nowcasting. We describe in this paper a simple random forest statistical model for nowcasting the COVID-19 daily new infection counts based on historic data along with a set of simple covariates, such as the currently reported infection counts, day of the week, and time since first reporting. We apply the model to adjust the daily infection counts in Ohio, and show that the predictions from this simple data-driven method compare favorably both in quality and computational burden to those obtained from the state-of-the-art hierarchical Bayesian model employing a complex statistical algorithm. The interactive notebook for performing nowcasting is available online at https://tinyurl.com/simpleMLnowcasting. Elsevier Inc. 2022-01 2021-11-27 /pmc/articles/PMC8635898/ /pubmed/34848217 http://dx.doi.org/10.1016/j.mbs.2021.108677 Text en © 2021 Elsevier Inc. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active. |
spellingShingle | Original Research Article Sahai, Saumya Yashmohini Gurukar, Saket KhudaBukhsh, Wasiur R. Parthasarathy, Srinivasan Rempała, Grzegorz A. A machine learning model for nowcasting epidemic incidence |
title | A machine learning model for nowcasting epidemic incidence |
title_full | A machine learning model for nowcasting epidemic incidence |
title_fullStr | A machine learning model for nowcasting epidemic incidence |
title_full_unstemmed | A machine learning model for nowcasting epidemic incidence |
title_short | A machine learning model for nowcasting epidemic incidence |
title_sort | machine learning model for nowcasting epidemic incidence |
topic | Original Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635898/ https://www.ncbi.nlm.nih.gov/pubmed/34848217 http://dx.doi.org/10.1016/j.mbs.2021.108677 |
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