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The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites
Anaphylaxis has rapidly spread around the world in the last several decades. Environmental factors seem to play a major role, and epigenetic marks, especially DNA methylation, get more attention. We discussed several GEO opening data classifications with TOP 100 specific methylation region values (n...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635942/ https://www.ncbi.nlm.nih.gov/pubmed/34908915 http://dx.doi.org/10.1155/2021/8202068 |
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author | Guo, Xiangjie Bai, Yaqin Guo, Hualin Wu, Peng Li, Hao Zhai, Liqin Feng, Yan Li, Jianguo Gao, Cairong Yun, Keming |
author_facet | Guo, Xiangjie Bai, Yaqin Guo, Hualin Wu, Peng Li, Hao Zhai, Liqin Feng, Yan Li, Jianguo Gao, Cairong Yun, Keming |
author_sort | Guo, Xiangjie |
collection | PubMed |
description | Anaphylaxis has rapidly spread around the world in the last several decades. Environmental factors seem to play a major role, and epigenetic marks, especially DNA methylation, get more attention. We discussed several GEO opening data classifications with TOP 100 specific methylation region values (normalized M-values on line) by machine learning, which are remarkable to classify specific anaphylaxis after monoallergen exposure. Then, we sequenced the whole-genome DNA methylation of six people (3 wormwood monoallergen atopic rhinitis patients and 3 normal-immune people) during the pollen season and analyzed the difference of the single nucleotide and DNA region. The results' divergences were obvious (the differential single nucleotides were mostly distributed in nongene regions but the differential DNA regions of GWAS, on the other hand), which may have caused most single nucleotides to be concealed in the regions' sequences. Therefore, we suggest that we should conduct more “pragmatic” and directly find special single-nucleotide changes after exposure to atopic allergens instead of complex correlativity. It is possible to try to use DNA methylation marks to accurately diagnose anaphylaxis and form a machine learning classification based on the single methylated CpGs. |
format | Online Article Text |
id | pubmed-8635942 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-86359422021-12-13 The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites Guo, Xiangjie Bai, Yaqin Guo, Hualin Wu, Peng Li, Hao Zhai, Liqin Feng, Yan Li, Jianguo Gao, Cairong Yun, Keming Contrast Media Mol Imaging Research Article Anaphylaxis has rapidly spread around the world in the last several decades. Environmental factors seem to play a major role, and epigenetic marks, especially DNA methylation, get more attention. We discussed several GEO opening data classifications with TOP 100 specific methylation region values (normalized M-values on line) by machine learning, which are remarkable to classify specific anaphylaxis after monoallergen exposure. Then, we sequenced the whole-genome DNA methylation of six people (3 wormwood monoallergen atopic rhinitis patients and 3 normal-immune people) during the pollen season and analyzed the difference of the single nucleotide and DNA region. The results' divergences were obvious (the differential single nucleotides were mostly distributed in nongene regions but the differential DNA regions of GWAS, on the other hand), which may have caused most single nucleotides to be concealed in the regions' sequences. Therefore, we suggest that we should conduct more “pragmatic” and directly find special single-nucleotide changes after exposure to atopic allergens instead of complex correlativity. It is possible to try to use DNA methylation marks to accurately diagnose anaphylaxis and form a machine learning classification based on the single methylated CpGs. Hindawi 2021-11-24 /pmc/articles/PMC8635942/ /pubmed/34908915 http://dx.doi.org/10.1155/2021/8202068 Text en Copyright © 2021 Xiangjie Guo et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Guo, Xiangjie Bai, Yaqin Guo, Hualin Wu, Peng Li, Hao Zhai, Liqin Feng, Yan Li, Jianguo Gao, Cairong Yun, Keming The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites |
title | The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites |
title_full | The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites |
title_fullStr | The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites |
title_full_unstemmed | The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites |
title_short | The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites |
title_sort | vista of application of specific anaphylaxis accurate diagnosis based on dna single-nucleotide methylation sites |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635942/ https://www.ncbi.nlm.nih.gov/pubmed/34908915 http://dx.doi.org/10.1155/2021/8202068 |
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