Cargando…

The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites

Anaphylaxis has rapidly spread around the world in the last several decades. Environmental factors seem to play a major role, and epigenetic marks, especially DNA methylation, get more attention. We discussed several GEO opening data classifications with TOP 100 specific methylation region values (n...

Descripción completa

Detalles Bibliográficos
Autores principales: Guo, Xiangjie, Bai, Yaqin, Guo, Hualin, Wu, Peng, Li, Hao, Zhai, Liqin, Feng, Yan, Li, Jianguo, Gao, Cairong, Yun, Keming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635942/
https://www.ncbi.nlm.nih.gov/pubmed/34908915
http://dx.doi.org/10.1155/2021/8202068
_version_ 1784608429041516544
author Guo, Xiangjie
Bai, Yaqin
Guo, Hualin
Wu, Peng
Li, Hao
Zhai, Liqin
Feng, Yan
Li, Jianguo
Gao, Cairong
Yun, Keming
author_facet Guo, Xiangjie
Bai, Yaqin
Guo, Hualin
Wu, Peng
Li, Hao
Zhai, Liqin
Feng, Yan
Li, Jianguo
Gao, Cairong
Yun, Keming
author_sort Guo, Xiangjie
collection PubMed
description Anaphylaxis has rapidly spread around the world in the last several decades. Environmental factors seem to play a major role, and epigenetic marks, especially DNA methylation, get more attention. We discussed several GEO opening data classifications with TOP 100 specific methylation region values (normalized M-values on line) by machine learning, which are remarkable to classify specific anaphylaxis after monoallergen exposure. Then, we sequenced the whole-genome DNA methylation of six people (3 wormwood monoallergen atopic rhinitis patients and 3 normal-immune people) during the pollen season and analyzed the difference of the single nucleotide and DNA region. The results' divergences were obvious (the differential single nucleotides were mostly distributed in nongene regions but the differential DNA regions of GWAS, on the other hand), which may have caused most single nucleotides to be concealed in the regions' sequences. Therefore, we suggest that we should conduct more “pragmatic” and directly find special single-nucleotide changes after exposure to atopic allergens instead of complex correlativity. It is possible to try to use DNA methylation marks to accurately diagnose anaphylaxis and form a machine learning classification based on the single methylated CpGs.
format Online
Article
Text
id pubmed-8635942
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-86359422021-12-13 The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites Guo, Xiangjie Bai, Yaqin Guo, Hualin Wu, Peng Li, Hao Zhai, Liqin Feng, Yan Li, Jianguo Gao, Cairong Yun, Keming Contrast Media Mol Imaging Research Article Anaphylaxis has rapidly spread around the world in the last several decades. Environmental factors seem to play a major role, and epigenetic marks, especially DNA methylation, get more attention. We discussed several GEO opening data classifications with TOP 100 specific methylation region values (normalized M-values on line) by machine learning, which are remarkable to classify specific anaphylaxis after monoallergen exposure. Then, we sequenced the whole-genome DNA methylation of six people (3 wormwood monoallergen atopic rhinitis patients and 3 normal-immune people) during the pollen season and analyzed the difference of the single nucleotide and DNA region. The results' divergences were obvious (the differential single nucleotides were mostly distributed in nongene regions but the differential DNA regions of GWAS, on the other hand), which may have caused most single nucleotides to be concealed in the regions' sequences. Therefore, we suggest that we should conduct more “pragmatic” and directly find special single-nucleotide changes after exposure to atopic allergens instead of complex correlativity. It is possible to try to use DNA methylation marks to accurately diagnose anaphylaxis and form a machine learning classification based on the single methylated CpGs. Hindawi 2021-11-24 /pmc/articles/PMC8635942/ /pubmed/34908915 http://dx.doi.org/10.1155/2021/8202068 Text en Copyright © 2021 Xiangjie Guo et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Guo, Xiangjie
Bai, Yaqin
Guo, Hualin
Wu, Peng
Li, Hao
Zhai, Liqin
Feng, Yan
Li, Jianguo
Gao, Cairong
Yun, Keming
The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites
title The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites
title_full The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites
title_fullStr The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites
title_full_unstemmed The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites
title_short The Vista of Application of Specific Anaphylaxis Accurate Diagnosis Based on DNA Single-Nucleotide Methylation Sites
title_sort vista of application of specific anaphylaxis accurate diagnosis based on dna single-nucleotide methylation sites
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8635942/
https://www.ncbi.nlm.nih.gov/pubmed/34908915
http://dx.doi.org/10.1155/2021/8202068
work_keys_str_mv AT guoxiangjie thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT baiyaqin thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT guohualin thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT wupeng thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT lihao thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT zhailiqin thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT fengyan thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT lijianguo thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT gaocairong thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT yunkeming thevistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT guoxiangjie vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT baiyaqin vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT guohualin vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT wupeng vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT lihao vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT zhailiqin vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT fengyan vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT lijianguo vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT gaocairong vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites
AT yunkeming vistaofapplicationofspecificanaphylaxisaccuratediagnosisbasedondnasinglenucleotidemethylationsites