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Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave

Considerable uncertainty surrounds the timeline of introductions and onsets of local transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) globally(1–7). Although a limited number of SARS-CoV-2 introductions were reported in January and February 2020 (refs.(8,9)), the narrowne...

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Autores principales: Davis, Jessica T., Chinazzi, Matteo, Perra, Nicola, Mu, Kunpeng, Pastore y Piontti, Ana, Ajelli, Marco, Dean, Natalie E., Gioannini, Corrado, Litvinova, Maria, Merler, Stefano, Rossi, Luca, Sun, Kaiyuan, Xiong, Xinyue, Longini, Ira M., Halloran, M. Elizabeth, Viboud, Cécile, Vespignani, Alessandro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8636257/
https://www.ncbi.nlm.nih.gov/pubmed/34695837
http://dx.doi.org/10.1038/s41586-021-04130-w
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author Davis, Jessica T.
Chinazzi, Matteo
Perra, Nicola
Mu, Kunpeng
Pastore y Piontti, Ana
Ajelli, Marco
Dean, Natalie E.
Gioannini, Corrado
Litvinova, Maria
Merler, Stefano
Rossi, Luca
Sun, Kaiyuan
Xiong, Xinyue
Longini, Ira M.
Halloran, M. Elizabeth
Viboud, Cécile
Vespignani, Alessandro
author_facet Davis, Jessica T.
Chinazzi, Matteo
Perra, Nicola
Mu, Kunpeng
Pastore y Piontti, Ana
Ajelli, Marco
Dean, Natalie E.
Gioannini, Corrado
Litvinova, Maria
Merler, Stefano
Rossi, Luca
Sun, Kaiyuan
Xiong, Xinyue
Longini, Ira M.
Halloran, M. Elizabeth
Viboud, Cécile
Vespignani, Alessandro
author_sort Davis, Jessica T.
collection PubMed
description Considerable uncertainty surrounds the timeline of introductions and onsets of local transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) globally(1–7). Although a limited number of SARS-CoV-2 introductions were reported in January and February 2020 (refs.(8,9)), the narrowness of the initial testing criteria, combined with a slow growth in testing capacity and porous travel screening(10), left many countries vulnerable to unmitigated, cryptic transmission. Here we use a global metapopulation epidemic model to provide a mechanistic understanding of the early dispersal of infections and the temporal windows of the introduction of SARS-CoV-2 and onset of local transmission in Europe and the USA. We find that community transmission of SARS-CoV-2 was likely to have been present in several areas of Europe and the USA by January 2020, and estimate that by early March, only 1 to 4 in 100 SARS-CoV-2 infections were detected by surveillance systems. The modelling results highlight international travel as the key driver of the introduction of SARS-CoV-2, with possible introductions and transmission events as early as December 2019 to January 2020. We find a heterogeneous geographic distribution of cumulative infection attack rates by 4 July 2020, ranging from 0.78% to 15.2% across US states and 0.19% to 13.2% in European countries. Our approach complements phylogenetic analyses and other surveillance approaches and provides insights that can be used to design innovative, model-driven surveillance systems that guide enhanced testing and response strategies.
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spelling pubmed-86362572021-12-27 Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave Davis, Jessica T. Chinazzi, Matteo Perra, Nicola Mu, Kunpeng Pastore y Piontti, Ana Ajelli, Marco Dean, Natalie E. Gioannini, Corrado Litvinova, Maria Merler, Stefano Rossi, Luca Sun, Kaiyuan Xiong, Xinyue Longini, Ira M. Halloran, M. Elizabeth Viboud, Cécile Vespignani, Alessandro Nature Article Considerable uncertainty surrounds the timeline of introductions and onsets of local transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) globally(1–7). Although a limited number of SARS-CoV-2 introductions were reported in January and February 2020 (refs.(8,9)), the narrowness of the initial testing criteria, combined with a slow growth in testing capacity and porous travel screening(10), left many countries vulnerable to unmitigated, cryptic transmission. Here we use a global metapopulation epidemic model to provide a mechanistic understanding of the early dispersal of infections and the temporal windows of the introduction of SARS-CoV-2 and onset of local transmission in Europe and the USA. We find that community transmission of SARS-CoV-2 was likely to have been present in several areas of Europe and the USA by January 2020, and estimate that by early March, only 1 to 4 in 100 SARS-CoV-2 infections were detected by surveillance systems. The modelling results highlight international travel as the key driver of the introduction of SARS-CoV-2, with possible introductions and transmission events as early as December 2019 to January 2020. We find a heterogeneous geographic distribution of cumulative infection attack rates by 4 July 2020, ranging from 0.78% to 15.2% across US states and 0.19% to 13.2% in European countries. Our approach complements phylogenetic analyses and other surveillance approaches and provides insights that can be used to design innovative, model-driven surveillance systems that guide enhanced testing and response strategies. Nature Publishing Group UK 2021-10-25 2021 /pmc/articles/PMC8636257/ /pubmed/34695837 http://dx.doi.org/10.1038/s41586-021-04130-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Davis, Jessica T.
Chinazzi, Matteo
Perra, Nicola
Mu, Kunpeng
Pastore y Piontti, Ana
Ajelli, Marco
Dean, Natalie E.
Gioannini, Corrado
Litvinova, Maria
Merler, Stefano
Rossi, Luca
Sun, Kaiyuan
Xiong, Xinyue
Longini, Ira M.
Halloran, M. Elizabeth
Viboud, Cécile
Vespignani, Alessandro
Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave
title Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave
title_full Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave
title_fullStr Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave
title_full_unstemmed Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave
title_short Cryptic transmission of SARS-CoV-2 and the first COVID-19 wave
title_sort cryptic transmission of sars-cov-2 and the first covid-19 wave
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8636257/
https://www.ncbi.nlm.nih.gov/pubmed/34695837
http://dx.doi.org/10.1038/s41586-021-04130-w
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