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Application of principal component analysis on temporal evolution of COVID-19

The COVID-19 is one of the worst pandemics in modern history. We applied principal component analysis (PCA) to the daily time series of the COVID-19 death cases and confirmed cases for the top 25 countries from April of 2020 to February of 2021. We calculated the eigenvalues and eigenvectors of the...

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Detalles Bibliográficos
Autores principales: Nobi, Ashadun, Tuhin, Kamrul Hasan, Lee, Jae Woo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8638895/
https://www.ncbi.nlm.nih.gov/pubmed/34855909
http://dx.doi.org/10.1371/journal.pone.0260899
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author Nobi, Ashadun
Tuhin, Kamrul Hasan
Lee, Jae Woo
author_facet Nobi, Ashadun
Tuhin, Kamrul Hasan
Lee, Jae Woo
author_sort Nobi, Ashadun
collection PubMed
description The COVID-19 is one of the worst pandemics in modern history. We applied principal component analysis (PCA) to the daily time series of the COVID-19 death cases and confirmed cases for the top 25 countries from April of 2020 to February of 2021. We calculated the eigenvalues and eigenvectors of the cross-correlation matrix of the changes in daily accumulated data over monthly time windows. The largest eigenvalue describes the overall evolution dynamics of the COVID-19 and indicates that evolution was faster in April of 2020 than in any other period. By using the first two PC coefficients, we can identify the group dynamics of the COVID-19 evolution. We observed groups under critical states in the loading plot and found that American and European countries are represented by strong clusters in the loading plot. The first PC plays an important role and the correlations (C(1)) between the normalized logarithmic changes in deaths or confirmed cases and the first PCs may be used as indicators of different phases of the COVID-19. By varying C(1) over time, we identified different phases of the COVID-19 in the analyzed countries over the target time period.
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spelling pubmed-86388952021-12-03 Application of principal component analysis on temporal evolution of COVID-19 Nobi, Ashadun Tuhin, Kamrul Hasan Lee, Jae Woo PLoS One Research Article The COVID-19 is one of the worst pandemics in modern history. We applied principal component analysis (PCA) to the daily time series of the COVID-19 death cases and confirmed cases for the top 25 countries from April of 2020 to February of 2021. We calculated the eigenvalues and eigenvectors of the cross-correlation matrix of the changes in daily accumulated data over monthly time windows. The largest eigenvalue describes the overall evolution dynamics of the COVID-19 and indicates that evolution was faster in April of 2020 than in any other period. By using the first two PC coefficients, we can identify the group dynamics of the COVID-19 evolution. We observed groups under critical states in the loading plot and found that American and European countries are represented by strong clusters in the loading plot. The first PC plays an important role and the correlations (C(1)) between the normalized logarithmic changes in deaths or confirmed cases and the first PCs may be used as indicators of different phases of the COVID-19. By varying C(1) over time, we identified different phases of the COVID-19 in the analyzed countries over the target time period. Public Library of Science 2021-12-02 /pmc/articles/PMC8638895/ /pubmed/34855909 http://dx.doi.org/10.1371/journal.pone.0260899 Text en © 2021 Nobi et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Nobi, Ashadun
Tuhin, Kamrul Hasan
Lee, Jae Woo
Application of principal component analysis on temporal evolution of COVID-19
title Application of principal component analysis on temporal evolution of COVID-19
title_full Application of principal component analysis on temporal evolution of COVID-19
title_fullStr Application of principal component analysis on temporal evolution of COVID-19
title_full_unstemmed Application of principal component analysis on temporal evolution of COVID-19
title_short Application of principal component analysis on temporal evolution of COVID-19
title_sort application of principal component analysis on temporal evolution of covid-19
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8638895/
https://www.ncbi.nlm.nih.gov/pubmed/34855909
http://dx.doi.org/10.1371/journal.pone.0260899
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