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Application of principal component analysis on temporal evolution of COVID-19
The COVID-19 is one of the worst pandemics in modern history. We applied principal component analysis (PCA) to the daily time series of the COVID-19 death cases and confirmed cases for the top 25 countries from April of 2020 to February of 2021. We calculated the eigenvalues and eigenvectors of the...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8638895/ https://www.ncbi.nlm.nih.gov/pubmed/34855909 http://dx.doi.org/10.1371/journal.pone.0260899 |
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author | Nobi, Ashadun Tuhin, Kamrul Hasan Lee, Jae Woo |
author_facet | Nobi, Ashadun Tuhin, Kamrul Hasan Lee, Jae Woo |
author_sort | Nobi, Ashadun |
collection | PubMed |
description | The COVID-19 is one of the worst pandemics in modern history. We applied principal component analysis (PCA) to the daily time series of the COVID-19 death cases and confirmed cases for the top 25 countries from April of 2020 to February of 2021. We calculated the eigenvalues and eigenvectors of the cross-correlation matrix of the changes in daily accumulated data over monthly time windows. The largest eigenvalue describes the overall evolution dynamics of the COVID-19 and indicates that evolution was faster in April of 2020 than in any other period. By using the first two PC coefficients, we can identify the group dynamics of the COVID-19 evolution. We observed groups under critical states in the loading plot and found that American and European countries are represented by strong clusters in the loading plot. The first PC plays an important role and the correlations (C(1)) between the normalized logarithmic changes in deaths or confirmed cases and the first PCs may be used as indicators of different phases of the COVID-19. By varying C(1) over time, we identified different phases of the COVID-19 in the analyzed countries over the target time period. |
format | Online Article Text |
id | pubmed-8638895 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-86388952021-12-03 Application of principal component analysis on temporal evolution of COVID-19 Nobi, Ashadun Tuhin, Kamrul Hasan Lee, Jae Woo PLoS One Research Article The COVID-19 is one of the worst pandemics in modern history. We applied principal component analysis (PCA) to the daily time series of the COVID-19 death cases and confirmed cases for the top 25 countries from April of 2020 to February of 2021. We calculated the eigenvalues and eigenvectors of the cross-correlation matrix of the changes in daily accumulated data over monthly time windows. The largest eigenvalue describes the overall evolution dynamics of the COVID-19 and indicates that evolution was faster in April of 2020 than in any other period. By using the first two PC coefficients, we can identify the group dynamics of the COVID-19 evolution. We observed groups under critical states in the loading plot and found that American and European countries are represented by strong clusters in the loading plot. The first PC plays an important role and the correlations (C(1)) between the normalized logarithmic changes in deaths or confirmed cases and the first PCs may be used as indicators of different phases of the COVID-19. By varying C(1) over time, we identified different phases of the COVID-19 in the analyzed countries over the target time period. Public Library of Science 2021-12-02 /pmc/articles/PMC8638895/ /pubmed/34855909 http://dx.doi.org/10.1371/journal.pone.0260899 Text en © 2021 Nobi et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Nobi, Ashadun Tuhin, Kamrul Hasan Lee, Jae Woo Application of principal component analysis on temporal evolution of COVID-19 |
title | Application of principal component analysis on temporal evolution of COVID-19 |
title_full | Application of principal component analysis on temporal evolution of COVID-19 |
title_fullStr | Application of principal component analysis on temporal evolution of COVID-19 |
title_full_unstemmed | Application of principal component analysis on temporal evolution of COVID-19 |
title_short | Application of principal component analysis on temporal evolution of COVID-19 |
title_sort | application of principal component analysis on temporal evolution of covid-19 |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8638895/ https://www.ncbi.nlm.nih.gov/pubmed/34855909 http://dx.doi.org/10.1371/journal.pone.0260899 |
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