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Connected-UNets: a deep learning architecture for breast mass segmentation
Breast cancer analysis implies that radiologists inspect mammograms to detect suspicious breast lesions and identify mass tumors. Artificial intelligence techniques offer automatic systems for breast mass segmentation to assist radiologists in their diagnosis. With the rapid development of deep lear...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8640011/ https://www.ncbi.nlm.nih.gov/pubmed/34857755 http://dx.doi.org/10.1038/s41523-021-00358-x |
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author | Baccouche, Asma Garcia-Zapirain, Begonya Castillo Olea, Cristian Elmaghraby, Adel S. |
author_facet | Baccouche, Asma Garcia-Zapirain, Begonya Castillo Olea, Cristian Elmaghraby, Adel S. |
author_sort | Baccouche, Asma |
collection | PubMed |
description | Breast cancer analysis implies that radiologists inspect mammograms to detect suspicious breast lesions and identify mass tumors. Artificial intelligence techniques offer automatic systems for breast mass segmentation to assist radiologists in their diagnosis. With the rapid development of deep learning and its application to medical imaging challenges, UNet and its variations is one of the state-of-the-art models for medical image segmentation that showed promising performance on mammography. In this paper, we propose an architecture, called Connected-UNets, which connects two UNets using additional modified skip connections. We integrate Atrous Spatial Pyramid Pooling (ASPP) in the two standard UNets to emphasize the contextual information within the encoder–decoder network architecture. We also apply the proposed architecture on the Attention UNet (AUNet) and the Residual UNet (ResUNet). We evaluated the proposed architectures on two publically available datasets, the Curated Breast Imaging Subset of Digital Database for Screening Mammography (CBIS-DDSM) and INbreast, and additionally on a private dataset. Experiments were also conducted using additional synthetic data using the cycle-consistent Generative Adversarial Network (CycleGAN) model between two unpaired datasets to augment and enhance the images. Qualitative and quantitative results show that the proposed architecture can achieve better automatic mass segmentation with a high Dice score of 89.52%, 95.28%, and 95.88% and Intersection over Union (IoU) score of 80.02%, 91.03%, and 92.27%, respectively, on CBIS-DDSM, INbreast, and the private dataset. |
format | Online Article Text |
id | pubmed-8640011 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-86400112021-12-15 Connected-UNets: a deep learning architecture for breast mass segmentation Baccouche, Asma Garcia-Zapirain, Begonya Castillo Olea, Cristian Elmaghraby, Adel S. NPJ Breast Cancer Article Breast cancer analysis implies that radiologists inspect mammograms to detect suspicious breast lesions and identify mass tumors. Artificial intelligence techniques offer automatic systems for breast mass segmentation to assist radiologists in their diagnosis. With the rapid development of deep learning and its application to medical imaging challenges, UNet and its variations is one of the state-of-the-art models for medical image segmentation that showed promising performance on mammography. In this paper, we propose an architecture, called Connected-UNets, which connects two UNets using additional modified skip connections. We integrate Atrous Spatial Pyramid Pooling (ASPP) in the two standard UNets to emphasize the contextual information within the encoder–decoder network architecture. We also apply the proposed architecture on the Attention UNet (AUNet) and the Residual UNet (ResUNet). We evaluated the proposed architectures on two publically available datasets, the Curated Breast Imaging Subset of Digital Database for Screening Mammography (CBIS-DDSM) and INbreast, and additionally on a private dataset. Experiments were also conducted using additional synthetic data using the cycle-consistent Generative Adversarial Network (CycleGAN) model between two unpaired datasets to augment and enhance the images. Qualitative and quantitative results show that the proposed architecture can achieve better automatic mass segmentation with a high Dice score of 89.52%, 95.28%, and 95.88% and Intersection over Union (IoU) score of 80.02%, 91.03%, and 92.27%, respectively, on CBIS-DDSM, INbreast, and the private dataset. Nature Publishing Group UK 2021-12-02 /pmc/articles/PMC8640011/ /pubmed/34857755 http://dx.doi.org/10.1038/s41523-021-00358-x Text en © This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Baccouche, Asma Garcia-Zapirain, Begonya Castillo Olea, Cristian Elmaghraby, Adel S. Connected-UNets: a deep learning architecture for breast mass segmentation |
title | Connected-UNets: a deep learning architecture for breast mass segmentation |
title_full | Connected-UNets: a deep learning architecture for breast mass segmentation |
title_fullStr | Connected-UNets: a deep learning architecture for breast mass segmentation |
title_full_unstemmed | Connected-UNets: a deep learning architecture for breast mass segmentation |
title_short | Connected-UNets: a deep learning architecture for breast mass segmentation |
title_sort | connected-unets: a deep learning architecture for breast mass segmentation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8640011/ https://www.ncbi.nlm.nih.gov/pubmed/34857755 http://dx.doi.org/10.1038/s41523-021-00358-x |
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