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Crystal graph attention networks for the prediction of stable materials
Graph neural networks for crystal structures typically use the atomic positions and the atomic species as input. Unfortunately, this information is not available when predicting new materials, for which the precise geometrical information is unknown. We circumvent this problem by replacing the preci...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Association for the Advancement of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8641929/ https://www.ncbi.nlm.nih.gov/pubmed/34860548 http://dx.doi.org/10.1126/sciadv.abi7948 |
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author | Schmidt, Jonathan Pettersson, Love Verdozzi, Claudio Botti, Silvana Marques, Miguel A. L. |
author_facet | Schmidt, Jonathan Pettersson, Love Verdozzi, Claudio Botti, Silvana Marques, Miguel A. L. |
author_sort | Schmidt, Jonathan |
collection | PubMed |
description | Graph neural networks for crystal structures typically use the atomic positions and the atomic species as input. Unfortunately, this information is not available when predicting new materials, for which the precise geometrical information is unknown. We circumvent this problem by replacing the precise bond distances with embeddings of graph distances. This allows our networks to be applied directly in high-throughput studies based on both composition and crystal structure prototype without using relaxed structures as input. To train these networks, we curate a dataset of over 2 million density functional calculations of crystals with consistent calculation parameters. We apply the resulting model to the high-throughput search of 15 million tetragonal perovskites of composition ABCD(2). As a result, we identify several thousand potentially stable compounds and demonstrate that transfer learning from the newly curated dataset reduces the required training data by 50%. |
format | Online Article Text |
id | pubmed-8641929 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Association for the Advancement of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-86419292021-12-13 Crystal graph attention networks for the prediction of stable materials Schmidt, Jonathan Pettersson, Love Verdozzi, Claudio Botti, Silvana Marques, Miguel A. L. Sci Adv Physical and Materials Sciences Graph neural networks for crystal structures typically use the atomic positions and the atomic species as input. Unfortunately, this information is not available when predicting new materials, for which the precise geometrical information is unknown. We circumvent this problem by replacing the precise bond distances with embeddings of graph distances. This allows our networks to be applied directly in high-throughput studies based on both composition and crystal structure prototype without using relaxed structures as input. To train these networks, we curate a dataset of over 2 million density functional calculations of crystals with consistent calculation parameters. We apply the resulting model to the high-throughput search of 15 million tetragonal perovskites of composition ABCD(2). As a result, we identify several thousand potentially stable compounds and demonstrate that transfer learning from the newly curated dataset reduces the required training data by 50%. American Association for the Advancement of Science 2021-12-03 /pmc/articles/PMC8641929/ /pubmed/34860548 http://dx.doi.org/10.1126/sciadv.abi7948 Text en Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC). https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial license (https://creativecommons.org/licenses/by-nc/4.0/) , which permits use, distribution, and reproduction in any medium, so long as the resultant use is not for commercial advantage and provided the original work is properly cited. |
spellingShingle | Physical and Materials Sciences Schmidt, Jonathan Pettersson, Love Verdozzi, Claudio Botti, Silvana Marques, Miguel A. L. Crystal graph attention networks for the prediction of stable materials |
title | Crystal graph attention networks for the prediction of stable materials |
title_full | Crystal graph attention networks for the prediction of stable materials |
title_fullStr | Crystal graph attention networks for the prediction of stable materials |
title_full_unstemmed | Crystal graph attention networks for the prediction of stable materials |
title_short | Crystal graph attention networks for the prediction of stable materials |
title_sort | crystal graph attention networks for the prediction of stable materials |
topic | Physical and Materials Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8641929/ https://www.ncbi.nlm.nih.gov/pubmed/34860548 http://dx.doi.org/10.1126/sciadv.abi7948 |
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