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(1)H R(1ρ) relaxation dispersion experiments in aromatic side chains
Aromatic side chains are attractive probes of protein dynamic, since they are often key residues in enzyme active sites and protein binding sites. Dynamic processes on microsecond to millisecond timescales can be studied by relaxation dispersion experiments that attenuate conformational exchange con...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Netherlands
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8642340/ https://www.ncbi.nlm.nih.gov/pubmed/34510298 http://dx.doi.org/10.1007/s10858-021-00382-w |
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author | Dreydoppel, Matthias Lichtenecker, Roman J. Akke, Mikael Weininger, Ulrich |
author_facet | Dreydoppel, Matthias Lichtenecker, Roman J. Akke, Mikael Weininger, Ulrich |
author_sort | Dreydoppel, Matthias |
collection | PubMed |
description | Aromatic side chains are attractive probes of protein dynamic, since they are often key residues in enzyme active sites and protein binding sites. Dynamic processes on microsecond to millisecond timescales can be studied by relaxation dispersion experiments that attenuate conformational exchange contributions to the transverse relaxation rate by varying the refocusing frequency of applied radio-frequency fields implemented as either CPMG pulse trains or continuous spin-lock periods. Here we present an aromatic (1)H R(1ρ) relaxation dispersion experiment enabling studies of two to three times faster exchange processes than achievable by existing experiments for aromatic side chains. We show that site-specific isotope labeling schemes generating isolated (1)H–(13)C spin pairs with vicinal (2)H–(12)C moieties are necessary to avoid anomalous relaxation dispersion profiles caused by Hartmann–Hahn matching due to the (3)J(HH) couplings and limited chemical shift differences among (1)H spins in phenylalanine, tyrosine and the six-ring moiety of tryptophan. This labeling pattern is sufficient in that remote protons do not cause additional complications. We validated the approach by measuring ring-flip kinetics in the small protein GB1. The determined rate constants, k(flip), agree well with previous results from (13)C R(1ρ) relaxation dispersion experiments, and yield (1)H chemical shift differences between the two sides of the ring in good agreement with values measured under slow-exchange conditions. The aromatic(1)H R(1ρ) relaxation dispersion experiment in combination with the site-selective (1)H–(13)C/(2)H–(12)C labeling scheme enable measurement of exchange rates up to k(ex) = 2k(flip) = 80,000 s(–1), and serve as a useful complement to previously developed (13)C-based methods. |
format | Online Article Text |
id | pubmed-8642340 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer Netherlands |
record_format | MEDLINE/PubMed |
spelling | pubmed-86423402021-12-17 (1)H R(1ρ) relaxation dispersion experiments in aromatic side chains Dreydoppel, Matthias Lichtenecker, Roman J. Akke, Mikael Weininger, Ulrich J Biomol NMR Article Aromatic side chains are attractive probes of protein dynamic, since they are often key residues in enzyme active sites and protein binding sites. Dynamic processes on microsecond to millisecond timescales can be studied by relaxation dispersion experiments that attenuate conformational exchange contributions to the transverse relaxation rate by varying the refocusing frequency of applied radio-frequency fields implemented as either CPMG pulse trains or continuous spin-lock periods. Here we present an aromatic (1)H R(1ρ) relaxation dispersion experiment enabling studies of two to three times faster exchange processes than achievable by existing experiments for aromatic side chains. We show that site-specific isotope labeling schemes generating isolated (1)H–(13)C spin pairs with vicinal (2)H–(12)C moieties are necessary to avoid anomalous relaxation dispersion profiles caused by Hartmann–Hahn matching due to the (3)J(HH) couplings and limited chemical shift differences among (1)H spins in phenylalanine, tyrosine and the six-ring moiety of tryptophan. This labeling pattern is sufficient in that remote protons do not cause additional complications. We validated the approach by measuring ring-flip kinetics in the small protein GB1. The determined rate constants, k(flip), agree well with previous results from (13)C R(1ρ) relaxation dispersion experiments, and yield (1)H chemical shift differences between the two sides of the ring in good agreement with values measured under slow-exchange conditions. The aromatic(1)H R(1ρ) relaxation dispersion experiment in combination with the site-selective (1)H–(13)C/(2)H–(12)C labeling scheme enable measurement of exchange rates up to k(ex) = 2k(flip) = 80,000 s(–1), and serve as a useful complement to previously developed (13)C-based methods. Springer Netherlands 2021-09-12 2021 /pmc/articles/PMC8642340/ /pubmed/34510298 http://dx.doi.org/10.1007/s10858-021-00382-w Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Dreydoppel, Matthias Lichtenecker, Roman J. Akke, Mikael Weininger, Ulrich (1)H R(1ρ) relaxation dispersion experiments in aromatic side chains |
title | (1)H R(1ρ) relaxation dispersion experiments in aromatic side chains |
title_full | (1)H R(1ρ) relaxation dispersion experiments in aromatic side chains |
title_fullStr | (1)H R(1ρ) relaxation dispersion experiments in aromatic side chains |
title_full_unstemmed | (1)H R(1ρ) relaxation dispersion experiments in aromatic side chains |
title_short | (1)H R(1ρ) relaxation dispersion experiments in aromatic side chains |
title_sort | (1)h r(1ρ) relaxation dispersion experiments in aromatic side chains |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8642340/ https://www.ncbi.nlm.nih.gov/pubmed/34510298 http://dx.doi.org/10.1007/s10858-021-00382-w |
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