Cargando…

QuickPIV: Efficient 3D particle image velocimetry software applied to quantifying cellular migration during embryogenesis

BACKGROUND: The technical development of imaging techniques in life sciences has enabled the three-dimensional recording of living samples at increasing temporal resolutions. Dynamic 3D data sets of developing organisms allow for time-resolved quantitative analyses of morphogenetic changes in three...

Descripción completa

Detalles Bibliográficos
Autores principales:	Pereyra, Marc, Drusko, Armin, Krämer, Franziska, Strobl, Frederic, Stelzer, Ernst H. K., Matthäus, Franziska
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Software
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8642913/ https://www.ncbi.nlm.nih.gov/pubmed/34863116 http://dx.doi.org/10.1186/s12859-021-04474-0

Ejemplares similares

Cell fate clusters in ICM organoids arise from cell fate heredity and division: a modelling approach
por: Liebisch, Tim, et al.
Publicado: (2020)

Particle Image Velocimetry (PIV) Investigation of the Turbulent Airflow in Slot-Die Melt Blowing
por: Xie, Sheng, et al.
Publicado: (2020)

Instantaneous 4D micro-particle image velocimetry (µPIV) via multifocal microscopy (MUM)
por: Guastamacchia, M. G. R., et al.
Publicado: (2022)

Experimental determination of the velocity distribution in USP Apparatus 1 (basket apparatus) using Particle Image Velocimetry (PIV)
por: Sirasitthichoke, Chadakarn, et al.
Publicado: (2021)

CellProfiler: image analysis software for identifying and quantifying cell phenotypes
por: Carpenter, Anne E, et al.
Publicado: (2006)

AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis
por: Boyle, Thomas J, et al.
Publicado: (2006)

Quantifying ventilation by X-ray velocimetry in healthy adults
por: Siddharthan, Trishul, et al.
Publicado: (2023)

QuickMIRSeq: a pipeline for quick and accurate quantification of both known miRNAs and isomiRs by jointly processing multiple samples from microRNA sequencing
por: Zhao, Shanrong, et al.
Publicado: (2017)

how_are_we_stranded_here: quick determination of RNA-Seq strandedness
por: Signal, Brandon, et al.
Publicado: (2022)

The Gaggle: An open-source software system for integrating bioinformatics software and data sources
por: Shannon, Paul T, et al.
Publicado: (2006)

NeoAnalysis: a Python-based toolbox for quick electrophysiological data processing and analysis
por: Zhang, Bo, et al.
Publicado: (2017)

Advances in the REDCAT software package
por: Schmidt, Chris, et al.
Publicado: (2013)

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
por: Shen, Li, et al.
Publicado: (2014)

QuickNGS elevates Next-Generation Sequencing data analysis to a new level of automation
por: Wagle, Prerana, et al.
Publicado: (2015)

The Computer-based Health Evaluation Software (CHES): a software for electronic patient-reported outcome monitoring
por: Holzner, Bernhard, et al.
Publicado: (2012)

Software for interpreting cardiopulmonary exercise tests
por: Ross, Robert M, et al.
Publicado: (2007)

Model requirements for Biobank Software Systems
por: Tukacs, Edit, et al.
Publicado: (2012)

Omics Metadata Management Software (OMMS)
por: Perez-Arriaga, Martha O, et al.
Publicado: (2015)

Twitter integration of chemistry software tools
por: Yoshikawa, Naruki, et al.
Publicado: (2021)

BADASS: BActeriocin-Diversity ASsessment Software
por: Costa, Sávio S., et al.
Publicado: (2023)

IPred - integrating ab initio and evidence based gene predictions to improve prediction accuracy
por: Zickmann, Franziska, et al.
Publicado: (2015)

GEVALT: An integrated software tool for genotype analysis
por: Davidovich, Ofir, et al.
Publicado: (2007)

JColorGrid: software for the visualization of biological measurements
por: Joachimiak, Marcin P, et al.
Publicado: (2006)

Versatile and open software for comparing large genomes
por: Kurtz, Stefan, et al.
Publicado: (2004)

T-REX: software for the processing and analysis of T-RFLP data
por: Culman, Steven W, et al.
Publicado: (2009)

Circumnutation Tracker: novel software for investigation of circumnutation
por: Stolarz, Maria, et al.
Publicado: (2014)

Regulatory network operations in the Pathway Tools software
por: Paley, Suzanne M, et al.
Publicado: (2012)

Software evaluation for de novo detection of transposons
por: Rodriguez, Matias, et al.
Publicado: (2022)

CGG toolkit: Software components for computational genomics
por: Vasileiou, Dimitrios, et al.
Publicado: (2023)

Development of an open-source software for isomer enumeration
por: Rieder, Salomé R., et al.
Publicado: (2023)

QuickRNASeq lifts large-scale RNA-seq data analyses to the next level of automation and interactive visualization
por: Zhao, Shanrong, et al.
Publicado: (2016)

BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
por: Hoffgaard, Franziska, et al.
Publicado: (2010)

Identifying and quantifying metabolites by scoring peaks of GC-MS data
por: Aggio, Raphael BM, et al.
Publicado: (2014)

TreeQNet: a webserver for Treatment evaluation with Quantified Network
por: Li, Zhenlei, et al.
Publicado: (2022)

S2O – A software tool for integrating research data from general purpose statistic software into electronic data capture systems
por: Bruland, Philipp, et al.
Publicado: (2017)

Tracembler – software for in-silico chromosome walking in unassembled genomes
por: Dong, Qunfeng, et al.
Publicado: (2007)

Random allocation software for parallel group randomized trials
por: Saghaei, Mahmood
Publicado: (2004)

Pegasys: software for executing and integrating analyses of biological sequences
por: Shah, Sohrab P, et al.
Publicado: (2004)

MICA: desktop software for comprehensive searching of DNA databases
por: Stokes, William A, et al.
Publicado: (2006)

THR Simulator – the software for generating radiographs of THR prosthesis
por: Wu, Tai-Yin, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_fo7j3gpr32ptkchdjgfko1i1fb