Cargando…

63. PK-RNN-V: A Deep Learning Model for Vancomycin Therapeutic Drug Monitoring using Electronic Health Record Data

BACKGROUND: Therapeutic drug monitoring (TDM) for vancomycin (VAN) with Bayesian models is recommended by national guidelines. However, limited data incorporating the models may hurt the performance. Our aim is to develop a novel deep learning-based pharmacokinetic model for vancomycin (PK-RNN-V) us...

Descripción completa

Detalles Bibliográficos
Autores principales: Masayuki, Nigo, Tran, Hong Thoai Nga, Xie, Ziqian, Feng, Han, Bekhet, Laila, Hongyu, Miao, Zhi, Degui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8644021/
http://dx.doi.org/10.1093/ofid/ofab466.063
_version_ 1784609989493522432
author Masayuki, Nigo
Tran, Hong Thoai Nga
Xie, Ziqian
Feng, Han
Bekhet, Laila
Hongyu, Miao
Zhi, Degui
author_facet Masayuki, Nigo
Tran, Hong Thoai Nga
Xie, Ziqian
Feng, Han
Bekhet, Laila
Hongyu, Miao
Zhi, Degui
author_sort Masayuki, Nigo
collection PubMed
description BACKGROUND: Therapeutic drug monitoring (TDM) for vancomycin (VAN) with Bayesian models is recommended by national guidelines. However, limited data incorporating the models may hurt the performance. Our aim is to develop a novel deep learning-based pharmacokinetic model for vancomycin (PK-RNN-V) using electronic medical records (EHRs) data to achieve more accurate and personalized predictions for VAN levels. METHODS: EHR data were retrospectively retrieved from Memorial Hermann Hospital System, comprising 14 hospitals in the greater Houston area. All patients who received VAN and had any VAN levels were eligible. Patients receiving hemodialysis and extracorporeal membrane oxygenation were excluded. Demographic data, vital signs, diagnostic codes, concomitant medications, VAN administration, and laboratory data were preprocessed as longitudinal data. VAN infusion, VAN level measurement, or each hospital day were the time steps for the models. The dataset was splited 70:15:15 for training, validation, and test sets. Our PK-RNN-V model predicted individual patient volume distribution (v) and VAN elimination (k) at each time step using an irregular timesteps GRU model. To compare, Bayesian models were developed from publicly available models, and tuned to feedback the first VAN level to update the v and k. (VTDM) RESULTS: A total of 12,258 patients with 195,140 encounters were identified from Aug, 2019 and March, 2020. After exclusion of 6,775 patients, 5,483 patients with 8,689 encounters were included. Table 1 summarized the characteristics of patients included in our study. 55,336 doses of VAN were administered with a median dosage of 1.0 gm. VAN levels were measured 18,588 times at various timings. The median VAN level was 14.7 mcg/mL Table 2 described the performance of our models and VTDM models. Our model exhibited better performance compared to VTDM model (RMSE: 5.64 vs. 6.57, respectively). Figure 1 shows example prediction curves of VAN levels from each model. [Image: see text] [Image: see text] [Image: see text] CONCLUSION: PK-RNN-V model is a novel approach to predict patient PK and VAN levels. Our results revealed promising performance of this model. Our model can take a wide range of real-world patient data into the model. Further studies are warranted for external validations and model optimizations. DISCLOSURES: All Authors: No reported disclosures
format Online
Article
Text
id pubmed-8644021
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-86440212021-12-06 63. PK-RNN-V: A Deep Learning Model for Vancomycin Therapeutic Drug Monitoring using Electronic Health Record Data Masayuki, Nigo Tran, Hong Thoai Nga Xie, Ziqian Feng, Han Bekhet, Laila Hongyu, Miao Zhi, Degui Open Forum Infect Dis Oral Abstracts BACKGROUND: Therapeutic drug monitoring (TDM) for vancomycin (VAN) with Bayesian models is recommended by national guidelines. However, limited data incorporating the models may hurt the performance. Our aim is to develop a novel deep learning-based pharmacokinetic model for vancomycin (PK-RNN-V) using electronic medical records (EHRs) data to achieve more accurate and personalized predictions for VAN levels. METHODS: EHR data were retrospectively retrieved from Memorial Hermann Hospital System, comprising 14 hospitals in the greater Houston area. All patients who received VAN and had any VAN levels were eligible. Patients receiving hemodialysis and extracorporeal membrane oxygenation were excluded. Demographic data, vital signs, diagnostic codes, concomitant medications, VAN administration, and laboratory data were preprocessed as longitudinal data. VAN infusion, VAN level measurement, or each hospital day were the time steps for the models. The dataset was splited 70:15:15 for training, validation, and test sets. Our PK-RNN-V model predicted individual patient volume distribution (v) and VAN elimination (k) at each time step using an irregular timesteps GRU model. To compare, Bayesian models were developed from publicly available models, and tuned to feedback the first VAN level to update the v and k. (VTDM) RESULTS: A total of 12,258 patients with 195,140 encounters were identified from Aug, 2019 and March, 2020. After exclusion of 6,775 patients, 5,483 patients with 8,689 encounters were included. Table 1 summarized the characteristics of patients included in our study. 55,336 doses of VAN were administered with a median dosage of 1.0 gm. VAN levels were measured 18,588 times at various timings. The median VAN level was 14.7 mcg/mL Table 2 described the performance of our models and VTDM models. Our model exhibited better performance compared to VTDM model (RMSE: 5.64 vs. 6.57, respectively). Figure 1 shows example prediction curves of VAN levels from each model. [Image: see text] [Image: see text] [Image: see text] CONCLUSION: PK-RNN-V model is a novel approach to predict patient PK and VAN levels. Our results revealed promising performance of this model. Our model can take a wide range of real-world patient data into the model. Further studies are warranted for external validations and model optimizations. DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2021-12-04 /pmc/articles/PMC8644021/ http://dx.doi.org/10.1093/ofid/ofab466.063 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Oral Abstracts
Masayuki, Nigo
Tran, Hong Thoai Nga
Xie, Ziqian
Feng, Han
Bekhet, Laila
Hongyu, Miao
Zhi, Degui
63. PK-RNN-V: A Deep Learning Model for Vancomycin Therapeutic Drug Monitoring using Electronic Health Record Data
title 63. PK-RNN-V: A Deep Learning Model for Vancomycin Therapeutic Drug Monitoring using Electronic Health Record Data
title_full 63. PK-RNN-V: A Deep Learning Model for Vancomycin Therapeutic Drug Monitoring using Electronic Health Record Data
title_fullStr 63. PK-RNN-V: A Deep Learning Model for Vancomycin Therapeutic Drug Monitoring using Electronic Health Record Data
title_full_unstemmed 63. PK-RNN-V: A Deep Learning Model for Vancomycin Therapeutic Drug Monitoring using Electronic Health Record Data
title_short 63. PK-RNN-V: A Deep Learning Model for Vancomycin Therapeutic Drug Monitoring using Electronic Health Record Data
title_sort 63. pk-rnn-v: a deep learning model for vancomycin therapeutic drug monitoring using electronic health record data
topic Oral Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8644021/
http://dx.doi.org/10.1093/ofid/ofab466.063
work_keys_str_mv AT masayukinigo 63pkrnnvadeeplearningmodelforvancomycintherapeuticdrugmonitoringusingelectronichealthrecorddata
AT tranhongthoainga 63pkrnnvadeeplearningmodelforvancomycintherapeuticdrugmonitoringusingelectronichealthrecorddata
AT xieziqian 63pkrnnvadeeplearningmodelforvancomycintherapeuticdrugmonitoringusingelectronichealthrecorddata
AT fenghan 63pkrnnvadeeplearningmodelforvancomycintherapeuticdrugmonitoringusingelectronichealthrecorddata
AT bekhetlaila 63pkrnnvadeeplearningmodelforvancomycintherapeuticdrugmonitoringusingelectronichealthrecorddata
AT hongyumiao 63pkrnnvadeeplearningmodelforvancomycintherapeuticdrugmonitoringusingelectronichealthrecorddata
AT zhidegui 63pkrnnvadeeplearningmodelforvancomycintherapeuticdrugmonitoringusingelectronichealthrecorddata