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662. Using Machine Learning to Aid in the Diagnosis of Multisystem Inflammatory Syndrome in Children
BACKGROUND: Multisystem inflammatory syndrome in children (MIS-C) is a newly recognized inflammatory syndrome that occurs post Severe Acute Respiratory Syndrome-Coronavirus-2 (SARS-CoV-2) infection. It affects multiple organ systems - particularly cardiac, gastrointestinal, dermatologic and neurolog...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8644093/ http://dx.doi.org/10.1093/ofid/ofab466.859 |
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author | Soneji, Maulin Tan, John Wong, Emily |
author_facet | Soneji, Maulin Tan, John Wong, Emily |
author_sort | Soneji, Maulin |
collection | PubMed |
description | BACKGROUND: Multisystem inflammatory syndrome in children (MIS-C) is a newly recognized inflammatory syndrome that occurs post Severe Acute Respiratory Syndrome-Coronavirus-2 (SARS-CoV-2) infection. It affects multiple organ systems - particularly cardiac, gastrointestinal, dermatologic and neurologic. Clinicians may have difficulty diagnosing MIS-C due to its novelty and similarity to Kawasaki disease. Our goal was to use machine learning to predict whether children would have MIS-C based on symptoms and laboratory values. METHODS: A retrospective review was conducted of patients admitted to Loma Linda University Children’s Hospital who were suspected of having MIS-C. Demographic, symptom (such as fever, abdominal pain, diarrhea, shock, etc), and laboratory data were collected from the electronic medical record. For the 115 patients and 20 laboratory values, there was a total of 130 missing values (5.7%). Missing laboratory values were imputed using the median value based on the presence or absence of MIS-C. The data were split into a training (93 patients, 80%) and testing (22 patients, 20%) set. The training set was used to train a random forest model and the testing set was used to evaluate model performance. R 4.0.2 was used for modeling with the following packages: tidymodels and randomForest. RESULTS: There were 115 patients of which 49 were females, and 77 were diagnosed with MIS-C. The median age of the patients with MIS-C was 115 months and 79 months for those without MIS-C. In the testing set, all 15 patients with MIS-C were classified correctly but of the 7 without MIS-C, the model predicted 4 of the patients correctly. This gives a sensitivity of 100% and specificity of 57%. When changing the seed and testing set, the sensitivity remained 100% but the specificity improved to 86%. The random forest algorithm showed that the most important features were pro-calcitonin, ferritin, pro-BNP, and CRP. CONCLUSION: During the height of the SARS-CoV-2 pandemic, many children were being admitted with suspected MIS-C, but clinicians struggled to confirm the diagnosis. We have found a model predicting which of these patients had MIS-C with high sensitivity. This model is a first step of many toward creating the foundation of personalized medicine for children. DISCLOSURES: All Authors: No reported disclosures |
format | Online Article Text |
id | pubmed-8644093 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-86440932021-12-06 662. Using Machine Learning to Aid in the Diagnosis of Multisystem Inflammatory Syndrome in Children Soneji, Maulin Tan, John Wong, Emily Open Forum Infect Dis Poster Abstracts BACKGROUND: Multisystem inflammatory syndrome in children (MIS-C) is a newly recognized inflammatory syndrome that occurs post Severe Acute Respiratory Syndrome-Coronavirus-2 (SARS-CoV-2) infection. It affects multiple organ systems - particularly cardiac, gastrointestinal, dermatologic and neurologic. Clinicians may have difficulty diagnosing MIS-C due to its novelty and similarity to Kawasaki disease. Our goal was to use machine learning to predict whether children would have MIS-C based on symptoms and laboratory values. METHODS: A retrospective review was conducted of patients admitted to Loma Linda University Children’s Hospital who were suspected of having MIS-C. Demographic, symptom (such as fever, abdominal pain, diarrhea, shock, etc), and laboratory data were collected from the electronic medical record. For the 115 patients and 20 laboratory values, there was a total of 130 missing values (5.7%). Missing laboratory values were imputed using the median value based on the presence or absence of MIS-C. The data were split into a training (93 patients, 80%) and testing (22 patients, 20%) set. The training set was used to train a random forest model and the testing set was used to evaluate model performance. R 4.0.2 was used for modeling with the following packages: tidymodels and randomForest. RESULTS: There were 115 patients of which 49 were females, and 77 were diagnosed with MIS-C. The median age of the patients with MIS-C was 115 months and 79 months for those without MIS-C. In the testing set, all 15 patients with MIS-C were classified correctly but of the 7 without MIS-C, the model predicted 4 of the patients correctly. This gives a sensitivity of 100% and specificity of 57%. When changing the seed and testing set, the sensitivity remained 100% but the specificity improved to 86%. The random forest algorithm showed that the most important features were pro-calcitonin, ferritin, pro-BNP, and CRP. CONCLUSION: During the height of the SARS-CoV-2 pandemic, many children were being admitted with suspected MIS-C, but clinicians struggled to confirm the diagnosis. We have found a model predicting which of these patients had MIS-C with high sensitivity. This model is a first step of many toward creating the foundation of personalized medicine for children. DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2021-12-04 /pmc/articles/PMC8644093/ http://dx.doi.org/10.1093/ofid/ofab466.859 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Poster Abstracts Soneji, Maulin Tan, John Wong, Emily 662. Using Machine Learning to Aid in the Diagnosis of Multisystem Inflammatory Syndrome in Children |
title | 662. Using Machine Learning to Aid in the Diagnosis of Multisystem Inflammatory Syndrome in Children |
title_full | 662. Using Machine Learning to Aid in the Diagnosis of Multisystem Inflammatory Syndrome in Children |
title_fullStr | 662. Using Machine Learning to Aid in the Diagnosis of Multisystem Inflammatory Syndrome in Children |
title_full_unstemmed | 662. Using Machine Learning to Aid in the Diagnosis of Multisystem Inflammatory Syndrome in Children |
title_short | 662. Using Machine Learning to Aid in the Diagnosis of Multisystem Inflammatory Syndrome in Children |
title_sort | 662. using machine learning to aid in the diagnosis of multisystem inflammatory syndrome in children |
topic | Poster Abstracts |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8644093/ http://dx.doi.org/10.1093/ofid/ofab466.859 |
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