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174. Development of a Machine Learning Prediction Model to Select Empirical Antibiotics in Patients with Clinically Suspected Urinary Tract Infection using Urine Culture Data

BACKGROUND: Increasing antimicrobial resistance and the emergence of superbugs are problems globally. Inappropriate empiric antibiotic use would be a reason to cause antibiotic resistance. However, it has been a challenge to prescribe empiric antibiotics as it is difficult to identify the causative...

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Autores principales: Kim, Chungsoo, Park, Rae Woong, Rhie, Sandy J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8645030/
http://dx.doi.org/10.1093/ofid/ofab466.376
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author Kim, Chungsoo
Park, Rae Woong
Rhie, Sandy J
author_facet Kim, Chungsoo
Park, Rae Woong
Rhie, Sandy J
author_sort Kim, Chungsoo
collection PubMed
description BACKGROUND: Increasing antimicrobial resistance and the emergence of superbugs are problems globally. Inappropriate empiric antibiotic use would be a reason to cause antibiotic resistance. However, it has been a challenge to prescribe empiric antibiotics as it is difficult to identify the causative organism beforehand. In this study, we aimed to develop a prediction model to estimate the risk of antibiotics resistance using urine culture tests. METHODS: The study population included adult patients who had at least one of the results from a urine culture test and antibiotic susceptibility tests (from ampicillin, ceftriaxone, ciprofloxacin, gentamicin, levofloxacin, nitrofurantoin, tetracycline, trimethoprim/sulfamethoxazole) on admission to Ajou University Medical Center. Outcomes were defined as a resistant or intermediate susceptibility. Candidate predictors were diagnosis, prescription, visit, laboratory, procedures of the study population. We split data to 75:25 for training and test. Lasso logistic regression (LLR), extreme gradient boosting machine (XGB), Random Forest (RF) were used as model algorithms. The models were evaluated by an area under the curve of receiver operator characteristics curve (AUROC), precision-recall curve (AUPRC), and its calibration. All codes are available in https://github.com/ABMI/AbxBetterChoice RESULTS: Total 33 covariates were selected for final prediction models. The RF showed the highest AUROC in the ceftriaxone and tetracycline models (0.823, 0.626, respectively). The XGB presented the highest AUROC for ciprofloxacin and nitrofurantoin (0.731, 0.706, respectively). The AUROC of RF and the XGB were the same in an ampicillin model (0.633). For gentamicin, levofloxacin, and trimethoprim/sulfamethoxazole, the AUROC of LLR was the highest (0.838, 0.831, 0.615, respectively). Among the models, the AUROC was the highest in the gentamicin model regardless of algorithms. All calibrations of the models were acceptable. [Image: see text] CONCLUSION: We developed prediction models with competing performances of discrimination and calibration. It would contribute to the proper selection of empiric antibiotics susceptible to those causative pathogens in hospitalized patients with a clinically suspected urinary tract infection. DISCLOSURES: All Authors: No reported disclosures
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spelling pubmed-86450302021-12-06 174. Development of a Machine Learning Prediction Model to Select Empirical Antibiotics in Patients with Clinically Suspected Urinary Tract Infection using Urine Culture Data Kim, Chungsoo Park, Rae Woong Rhie, Sandy J Open Forum Infect Dis Poster Abstracts BACKGROUND: Increasing antimicrobial resistance and the emergence of superbugs are problems globally. Inappropriate empiric antibiotic use would be a reason to cause antibiotic resistance. However, it has been a challenge to prescribe empiric antibiotics as it is difficult to identify the causative organism beforehand. In this study, we aimed to develop a prediction model to estimate the risk of antibiotics resistance using urine culture tests. METHODS: The study population included adult patients who had at least one of the results from a urine culture test and antibiotic susceptibility tests (from ampicillin, ceftriaxone, ciprofloxacin, gentamicin, levofloxacin, nitrofurantoin, tetracycline, trimethoprim/sulfamethoxazole) on admission to Ajou University Medical Center. Outcomes were defined as a resistant or intermediate susceptibility. Candidate predictors were diagnosis, prescription, visit, laboratory, procedures of the study population. We split data to 75:25 for training and test. Lasso logistic regression (LLR), extreme gradient boosting machine (XGB), Random Forest (RF) were used as model algorithms. The models were evaluated by an area under the curve of receiver operator characteristics curve (AUROC), precision-recall curve (AUPRC), and its calibration. All codes are available in https://github.com/ABMI/AbxBetterChoice RESULTS: Total 33 covariates were selected for final prediction models. The RF showed the highest AUROC in the ceftriaxone and tetracycline models (0.823, 0.626, respectively). The XGB presented the highest AUROC for ciprofloxacin and nitrofurantoin (0.731, 0.706, respectively). The AUROC of RF and the XGB were the same in an ampicillin model (0.633). For gentamicin, levofloxacin, and trimethoprim/sulfamethoxazole, the AUROC of LLR was the highest (0.838, 0.831, 0.615, respectively). Among the models, the AUROC was the highest in the gentamicin model regardless of algorithms. All calibrations of the models were acceptable. [Image: see text] CONCLUSION: We developed prediction models with competing performances of discrimination and calibration. It would contribute to the proper selection of empiric antibiotics susceptible to those causative pathogens in hospitalized patients with a clinically suspected urinary tract infection. DISCLOSURES: All Authors: No reported disclosures Oxford University Press 2021-12-04 /pmc/articles/PMC8645030/ http://dx.doi.org/10.1093/ofid/ofab466.376 Text en © The Author(s) 2021. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Poster Abstracts
Kim, Chungsoo
Park, Rae Woong
Rhie, Sandy J
174. Development of a Machine Learning Prediction Model to Select Empirical Antibiotics in Patients with Clinically Suspected Urinary Tract Infection using Urine Culture Data
title 174. Development of a Machine Learning Prediction Model to Select Empirical Antibiotics in Patients with Clinically Suspected Urinary Tract Infection using Urine Culture Data
title_full 174. Development of a Machine Learning Prediction Model to Select Empirical Antibiotics in Patients with Clinically Suspected Urinary Tract Infection using Urine Culture Data
title_fullStr 174. Development of a Machine Learning Prediction Model to Select Empirical Antibiotics in Patients with Clinically Suspected Urinary Tract Infection using Urine Culture Data
title_full_unstemmed 174. Development of a Machine Learning Prediction Model to Select Empirical Antibiotics in Patients with Clinically Suspected Urinary Tract Infection using Urine Culture Data
title_short 174. Development of a Machine Learning Prediction Model to Select Empirical Antibiotics in Patients with Clinically Suspected Urinary Tract Infection using Urine Culture Data
title_sort 174. development of a machine learning prediction model to select empirical antibiotics in patients with clinically suspected urinary tract infection using urine culture data
topic Poster Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8645030/
http://dx.doi.org/10.1093/ofid/ofab466.376
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