Cargando…

Identification TRIM46 as a Potential Biomarker and Therapeutic Target for Clear Cell Renal Cell Carcinoma Through Comprehensive Bioinformatics Analyses

Background: Tripartite motif containing 46 was initially identified as the oncogene in several human tumors. However, the clinical value and potential functions of tripartite motif containing 46 (TRIM46) in clear cell renal cell carcinoma (ccRCC) remained largely unclear. Methods: The expressing pat...

Descripción completa

Detalles Bibliográficos
Autores principales: Ren, Xiang-bin, Zhao, Jing, Liang, Xue-feng, Guo, Xu-dong, Jiang, Shao-bo, Xiang, Yu-zhu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8645697/
https://www.ncbi.nlm.nih.gov/pubmed/34881275
http://dx.doi.org/10.3389/fmed.2021.785331
_version_ 1784610359809671168
author Ren, Xiang-bin
Zhao, Jing
Liang, Xue-feng
Guo, Xu-dong
Jiang, Shao-bo
Xiang, Yu-zhu
author_facet Ren, Xiang-bin
Zhao, Jing
Liang, Xue-feng
Guo, Xu-dong
Jiang, Shao-bo
Xiang, Yu-zhu
author_sort Ren, Xiang-bin
collection PubMed
description Background: Tripartite motif containing 46 was initially identified as the oncogene in several human tumors. However, the clinical value and potential functions of tripartite motif containing 46 (TRIM46) in clear cell renal cell carcinoma (ccRCC) remained largely unclear. Methods: The expressing patterns, clinical involvement, and prognostic values of TRIM46 were analyzed using the data obtained from TCGA and GEO databases. A nomogram was constructed to examine the outcome of patients with ccRCC. We estimated the association between TRIM46 with tumor immunity in ccRCC. Results: Tripartite motif containing 46 was highly expressed in ccRCC, and its upregulation revealed an unfavorable prognosis. A nomogram based on TRIM46 expressions and other independent prognostic factors could robustly predict the overall survival of tumor patients. TRIM46 has a strong positive correlation with NUMBL, CACNB1, THBS3, ROBO3, MAP3K12, ANKRD13D, PIF1, PRELID3A, ANKRD13B, and PCNX2. Mechanically, TRIM46 displayed regulatory functions in ccRCC progression via several tumor-associated pathways. Besides, we observed that TRIM46 was distinctly related to tumor immunity in ccRCC. Conclusions: Our findings provide a novel tumor promotive role regarding TRIM46 function in the malignant progression of ccRCC.
format Online
Article
Text
id pubmed-8645697
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-86456972021-12-07 Identification TRIM46 as a Potential Biomarker and Therapeutic Target for Clear Cell Renal Cell Carcinoma Through Comprehensive Bioinformatics Analyses Ren, Xiang-bin Zhao, Jing Liang, Xue-feng Guo, Xu-dong Jiang, Shao-bo Xiang, Yu-zhu Front Med (Lausanne) Medicine Background: Tripartite motif containing 46 was initially identified as the oncogene in several human tumors. However, the clinical value and potential functions of tripartite motif containing 46 (TRIM46) in clear cell renal cell carcinoma (ccRCC) remained largely unclear. Methods: The expressing patterns, clinical involvement, and prognostic values of TRIM46 were analyzed using the data obtained from TCGA and GEO databases. A nomogram was constructed to examine the outcome of patients with ccRCC. We estimated the association between TRIM46 with tumor immunity in ccRCC. Results: Tripartite motif containing 46 was highly expressed in ccRCC, and its upregulation revealed an unfavorable prognosis. A nomogram based on TRIM46 expressions and other independent prognostic factors could robustly predict the overall survival of tumor patients. TRIM46 has a strong positive correlation with NUMBL, CACNB1, THBS3, ROBO3, MAP3K12, ANKRD13D, PIF1, PRELID3A, ANKRD13B, and PCNX2. Mechanically, TRIM46 displayed regulatory functions in ccRCC progression via several tumor-associated pathways. Besides, we observed that TRIM46 was distinctly related to tumor immunity in ccRCC. Conclusions: Our findings provide a novel tumor promotive role regarding TRIM46 function in the malignant progression of ccRCC. Frontiers Media S.A. 2021-11-22 /pmc/articles/PMC8645697/ /pubmed/34881275 http://dx.doi.org/10.3389/fmed.2021.785331 Text en Copyright © 2021 Ren, Zhao, Liang, Guo, Jiang and Xiang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Medicine
Ren, Xiang-bin
Zhao, Jing
Liang, Xue-feng
Guo, Xu-dong
Jiang, Shao-bo
Xiang, Yu-zhu
Identification TRIM46 as a Potential Biomarker and Therapeutic Target for Clear Cell Renal Cell Carcinoma Through Comprehensive Bioinformatics Analyses
title Identification TRIM46 as a Potential Biomarker and Therapeutic Target for Clear Cell Renal Cell Carcinoma Through Comprehensive Bioinformatics Analyses
title_full Identification TRIM46 as a Potential Biomarker and Therapeutic Target for Clear Cell Renal Cell Carcinoma Through Comprehensive Bioinformatics Analyses
title_fullStr Identification TRIM46 as a Potential Biomarker and Therapeutic Target for Clear Cell Renal Cell Carcinoma Through Comprehensive Bioinformatics Analyses
title_full_unstemmed Identification TRIM46 as a Potential Biomarker and Therapeutic Target for Clear Cell Renal Cell Carcinoma Through Comprehensive Bioinformatics Analyses
title_short Identification TRIM46 as a Potential Biomarker and Therapeutic Target for Clear Cell Renal Cell Carcinoma Through Comprehensive Bioinformatics Analyses
title_sort identification trim46 as a potential biomarker and therapeutic target for clear cell renal cell carcinoma through comprehensive bioinformatics analyses
topic Medicine
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8645697/
https://www.ncbi.nlm.nih.gov/pubmed/34881275
http://dx.doi.org/10.3389/fmed.2021.785331
work_keys_str_mv AT renxiangbin identificationtrim46asapotentialbiomarkerandtherapeutictargetforclearcellrenalcellcarcinomathroughcomprehensivebioinformaticsanalyses
AT zhaojing identificationtrim46asapotentialbiomarkerandtherapeutictargetforclearcellrenalcellcarcinomathroughcomprehensivebioinformaticsanalyses
AT liangxuefeng identificationtrim46asapotentialbiomarkerandtherapeutictargetforclearcellrenalcellcarcinomathroughcomprehensivebioinformaticsanalyses
AT guoxudong identificationtrim46asapotentialbiomarkerandtherapeutictargetforclearcellrenalcellcarcinomathroughcomprehensivebioinformaticsanalyses
AT jiangshaobo identificationtrim46asapotentialbiomarkerandtherapeutictargetforclearcellrenalcellcarcinomathroughcomprehensivebioinformaticsanalyses
AT xiangyuzhu identificationtrim46asapotentialbiomarkerandtherapeutictargetforclearcellrenalcellcarcinomathroughcomprehensivebioinformaticsanalyses