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SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction
Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very qu...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Biophysical Society
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8648368/ https://www.ncbi.nlm.nih.gov/pubmed/34883069 http://dx.doi.org/10.1016/j.bpj.2021.12.002 |
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author | Huang, Yihan Harris, Bradley S. Minami, Shiaki A. Jung, Seongwon Shah, Priya S. Nandi, Somen McDonald, Karen A. Faller, Roland |
author_facet | Huang, Yihan Harris, Bradley S. Minami, Shiaki A. Jung, Seongwon Shah, Priya S. Nandi, Somen McDonald, Karen A. Faller, Roland |
author_sort | Huang, Yihan |
collection | PubMed |
description | Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very quickly when pulling the proteins apart and only slowly drops at larger distances. We see a catch-slip-type behavior whereby interactions during pulling break and are taken over by new interactions forming. The dominant interaction mode is hydrogen bonds, but Lennard-Jones and electrostatic interactions are relevant as well. |
format | Online Article Text |
id | pubmed-8648368 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | The Biophysical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-86483682021-12-07 SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction Huang, Yihan Harris, Bradley S. Minami, Shiaki A. Jung, Seongwon Shah, Priya S. Nandi, Somen McDonald, Karen A. Faller, Roland Biophys J Articles Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very quickly when pulling the proteins apart and only slowly drops at larger distances. We see a catch-slip-type behavior whereby interactions during pulling break and are taken over by new interactions forming. The dominant interaction mode is hydrogen bonds, but Lennard-Jones and electrostatic interactions are relevant as well. The Biophysical Society 2022-01-04 2021-12-07 /pmc/articles/PMC8648368/ /pubmed/34883069 http://dx.doi.org/10.1016/j.bpj.2021.12.002 Text en © 2021 Biophysical Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Articles Huang, Yihan Harris, Bradley S. Minami, Shiaki A. Jung, Seongwon Shah, Priya S. Nandi, Somen McDonald, Karen A. Faller, Roland SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction |
title | SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction |
title_full | SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction |
title_fullStr | SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction |
title_full_unstemmed | SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction |
title_short | SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction |
title_sort | sars-cov-2 spike binding to ace2 is stronger and longer ranged due to glycan interaction |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8648368/ https://www.ncbi.nlm.nih.gov/pubmed/34883069 http://dx.doi.org/10.1016/j.bpj.2021.12.002 |
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