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SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction

Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very qu...

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Detalles Bibliográficos
Autores principales: Huang, Yihan, Harris, Bradley S., Minami, Shiaki A., Jung, Seongwon, Shah, Priya S., Nandi, Somen, McDonald, Karen A., Faller, Roland
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Biophysical Society 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8648368/
https://www.ncbi.nlm.nih.gov/pubmed/34883069
http://dx.doi.org/10.1016/j.bpj.2021.12.002
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author Huang, Yihan
Harris, Bradley S.
Minami, Shiaki A.
Jung, Seongwon
Shah, Priya S.
Nandi, Somen
McDonald, Karen A.
Faller, Roland
author_facet Huang, Yihan
Harris, Bradley S.
Minami, Shiaki A.
Jung, Seongwon
Shah, Priya S.
Nandi, Somen
McDonald, Karen A.
Faller, Roland
author_sort Huang, Yihan
collection PubMed
description Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very quickly when pulling the proteins apart and only slowly drops at larger distances. We see a catch-slip-type behavior whereby interactions during pulling break and are taken over by new interactions forming. The dominant interaction mode is hydrogen bonds, but Lennard-Jones and electrostatic interactions are relevant as well.
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spelling pubmed-86483682021-12-07 SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction Huang, Yihan Harris, Bradley S. Minami, Shiaki A. Jung, Seongwon Shah, Priya S. Nandi, Somen McDonald, Karen A. Faller, Roland Biophys J Articles Highly detailed steered molecular dynamics simulations are performed on differently glycosylated receptor binding domains of the severe acute respiratory syndrome coronavirus-2 spike protein. The binding strength and the binding range increase with glycosylation. The interaction energy rises very quickly when pulling the proteins apart and only slowly drops at larger distances. We see a catch-slip-type behavior whereby interactions during pulling break and are taken over by new interactions forming. The dominant interaction mode is hydrogen bonds, but Lennard-Jones and electrostatic interactions are relevant as well. The Biophysical Society 2022-01-04 2021-12-07 /pmc/articles/PMC8648368/ /pubmed/34883069 http://dx.doi.org/10.1016/j.bpj.2021.12.002 Text en © 2021 Biophysical Society. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Articles
Huang, Yihan
Harris, Bradley S.
Minami, Shiaki A.
Jung, Seongwon
Shah, Priya S.
Nandi, Somen
McDonald, Karen A.
Faller, Roland
SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction
title SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction
title_full SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction
title_fullStr SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction
title_full_unstemmed SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction
title_short SARS-CoV-2 spike binding to ACE2 is stronger and longer ranged due to glycan interaction
title_sort sars-cov-2 spike binding to ace2 is stronger and longer ranged due to glycan interaction
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8648368/
https://www.ncbi.nlm.nih.gov/pubmed/34883069
http://dx.doi.org/10.1016/j.bpj.2021.12.002
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