Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications

For quality, interpretation, reproducibility and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source software tool that was developed in the context of the...

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Autores principales: Rigano, Alessandro, Ehmsen, Shannon, Öztürk, Serkan Utku, Ryan, Joel, Balashov, Alexander, Hammer, Mathias, Kirli, Koray, Boehm, Ulrike, Brown, Claire M., Bellve, Karl, Chambers, James J., Cosolo, Andrea, Coleman, Robert A., Faklaris, Orestis, Fogarty, Kevin E., Guilbert, Thomas, Hamacher, Anna B., Itano, Michelle S., Keeley, Daniel P., Kunis, Susanne, Lacoste, Judith, Laude, Alex, Ma, Willa Y., Marcello, Marco, Montero-Llopis, Paula, Nelson, Glyn, Nitschke, Roland, Pimentel, Jaime A., Weidtkamp-Peters, Stefanie, Park, Peter J., Alver, Burak H., Grunwald, David, Strambio-De-Castillia, Caterina
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group US 2021
Materias:
Brief Communication
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8648560/
https://www.ncbi.nlm.nih.gov/pubmed/34862503
http://dx.doi.org/10.1038/s41592-021-01315-z
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author Rigano, Alessandro
Ehmsen, Shannon
Öztürk, Serkan Utku
Ryan, Joel
Balashov, Alexander
Hammer, Mathias
Kirli, Koray
Boehm, Ulrike
Brown, Claire M.
Bellve, Karl
Chambers, James J.
Cosolo, Andrea
Coleman, Robert A.
Faklaris, Orestis
Fogarty, Kevin E.
Guilbert, Thomas
Hamacher, Anna B.
Itano, Michelle S.
Keeley, Daniel P.
Kunis, Susanne
Lacoste, Judith
Laude, Alex
Ma, Willa Y.
Marcello, Marco
Montero-Llopis, Paula
Nelson, Glyn
Nitschke, Roland
Pimentel, Jaime A.
Weidtkamp-Peters, Stefanie
Park, Peter J.
Alver, Burak H.
Grunwald, David
Strambio-De-Castillia, Caterina
author_facet Rigano, Alessandro
Ehmsen, Shannon
Öztürk, Serkan Utku
Ryan, Joel
Balashov, Alexander
Hammer, Mathias
Kirli, Koray
Boehm, Ulrike
Brown, Claire M.
Bellve, Karl
Chambers, James J.
Cosolo, Andrea
Coleman, Robert A.
Faklaris, Orestis
Fogarty, Kevin E.
Guilbert, Thomas
Hamacher, Anna B.
Itano, Michelle S.
Keeley, Daniel P.
Kunis, Susanne
Lacoste, Judith
Laude, Alex
Ma, Willa Y.
Marcello, Marco
Montero-Llopis, Paula
Nelson, Glyn
Nitschke, Roland
Pimentel, Jaime A.
Weidtkamp-Peters, Stefanie
Park, Peter J.
Alver, Burak H.
Grunwald, David
Strambio-De-Castillia, Caterina
author_sort Rigano, Alessandro
collection PubMed
description For quality, interpretation, reproducibility and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source software tool that was developed in the context of the 4D Nucleome (4DN) consortium and is designed to facilitate the extraction and collection of relevant microscopy metadata as specified by the recent 4DN-BINA-OME tiered-system of Microscopy Metadata specifications. In addition to substantially lowering the burden of quality assurance, the visual nature of Micro-Meta App makes it particularly suited for training purposes.
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spelling pubmed-86485602021-12-22 Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications Rigano, Alessandro Ehmsen, Shannon Öztürk, Serkan Utku Ryan, Joel Balashov, Alexander Hammer, Mathias Kirli, Koray Boehm, Ulrike Brown, Claire M. Bellve, Karl Chambers, James J. Cosolo, Andrea Coleman, Robert A. Faklaris, Orestis Fogarty, Kevin E. Guilbert, Thomas Hamacher, Anna B. Itano, Michelle S. Keeley, Daniel P. Kunis, Susanne Lacoste, Judith Laude, Alex Ma, Willa Y. Marcello, Marco Montero-Llopis, Paula Nelson, Glyn Nitschke, Roland Pimentel, Jaime A. Weidtkamp-Peters, Stefanie Park, Peter J. Alver, Burak H. Grunwald, David Strambio-De-Castillia, Caterina Nat Methods Brief Communication For quality, interpretation, reproducibility and sharing value, microscopy images should be accompanied by detailed descriptions of the conditions that were used to produce them. Micro-Meta App is an intuitive, highly interoperable, open-source software tool that was developed in the context of the 4D Nucleome (4DN) consortium and is designed to facilitate the extraction and collection of relevant microscopy metadata as specified by the recent 4DN-BINA-OME tiered-system of Microscopy Metadata specifications. In addition to substantially lowering the burden of quality assurance, the visual nature of Micro-Meta App makes it particularly suited for training purposes. Nature Publishing Group US 2021-12-03 2021 /pmc/articles/PMC8648560/ /pubmed/34862503 http://dx.doi.org/10.1038/s41592-021-01315-z Text en © The Author(s) 2021, corrected publication 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Brief Communication
Rigano, Alessandro
Ehmsen, Shannon
Öztürk, Serkan Utku
Ryan, Joel
Balashov, Alexander
Hammer, Mathias
Kirli, Koray
Boehm, Ulrike
Brown, Claire M.
Bellve, Karl
Chambers, James J.
Cosolo, Andrea
Coleman, Robert A.
Faklaris, Orestis
Fogarty, Kevin E.
Guilbert, Thomas
Hamacher, Anna B.
Itano, Michelle S.
Keeley, Daniel P.
Kunis, Susanne
Lacoste, Judith
Laude, Alex
Ma, Willa Y.
Marcello, Marco
Montero-Llopis, Paula
Nelson, Glyn
Nitschke, Roland
Pimentel, Jaime A.
Weidtkamp-Peters, Stefanie
Park, Peter J.
Alver, Burak H.
Grunwald, David
Strambio-De-Castillia, Caterina
Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
title Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
title_full Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
title_fullStr Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
title_full_unstemmed Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
title_short Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications
title_sort micro-meta app: an interactive tool for collecting microscopy metadata based on community specifications
topic Brief Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8648560/
https://www.ncbi.nlm.nih.gov/pubmed/34862503
http://dx.doi.org/10.1038/s41592-021-01315-z
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