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Prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma
Despite the development in hepatocellular carcinoma (HCC) treatment in recent years, the therapeutic outcome of HCC remains unfavourable. This study examines the prognosis of HCC from a genetic level using clinical databases and single‐cell data to identify genes with a high prognostic value. Three...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8650024/ https://www.ncbi.nlm.nih.gov/pubmed/34726341 http://dx.doi.org/10.1111/jcmm.17035 |
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author | Lai, Enjiang Tai, Yang Jiang, Jingsun Zhao, Chong Xiao, Yang Quan, Xin Wu, Hao Gao, Jinhang |
author_facet | Lai, Enjiang Tai, Yang Jiang, Jingsun Zhao, Chong Xiao, Yang Quan, Xin Wu, Hao Gao, Jinhang |
author_sort | Lai, Enjiang |
collection | PubMed |
description | Despite the development in hepatocellular carcinoma (HCC) treatment in recent years, the therapeutic outcome of HCC remains unfavourable. This study examines the prognosis of HCC from a genetic level using clinical databases and single‐cell data to identify genes with a high prognostic value. Three up‐regulated genes (UBE2S, PTTG1, and CDC20) and two down‐regulated genes (SOCS2 and DNASE1L3) in HCC tissues were identified. Various analyses confirmed its correlation with tumour stage (p < 0.01) and patient survival time (log‐rank p < 0.001). Immune analysis, single‐cell analysis, and gene set enrichment analysis (GSEA) were employed to provide insight on how they affect cancer progression, and we observed a close relation between these genes and tumour immune infiltration. Eventually, we constructed a risk score system that risk score = (0.0465) × UBE2S + (0.1851) × CDC20 + (−0.0461) × DNASE1L3 + (−0.2279) × SOCS2 (5‐year area under curve = 0.706). The risk score system may serve as an effective novel prognostic system for HCC patients. This study might provide novel ideas for prognostic or therapeutic biomarkers for HCC. |
format | Online Article Text |
id | pubmed-8650024 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86500242021-12-20 Prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma Lai, Enjiang Tai, Yang Jiang, Jingsun Zhao, Chong Xiao, Yang Quan, Xin Wu, Hao Gao, Jinhang J Cell Mol Med Original Articles Despite the development in hepatocellular carcinoma (HCC) treatment in recent years, the therapeutic outcome of HCC remains unfavourable. This study examines the prognosis of HCC from a genetic level using clinical databases and single‐cell data to identify genes with a high prognostic value. Three up‐regulated genes (UBE2S, PTTG1, and CDC20) and two down‐regulated genes (SOCS2 and DNASE1L3) in HCC tissues were identified. Various analyses confirmed its correlation with tumour stage (p < 0.01) and patient survival time (log‐rank p < 0.001). Immune analysis, single‐cell analysis, and gene set enrichment analysis (GSEA) were employed to provide insight on how they affect cancer progression, and we observed a close relation between these genes and tumour immune infiltration. Eventually, we constructed a risk score system that risk score = (0.0465) × UBE2S + (0.1851) × CDC20 + (−0.0461) × DNASE1L3 + (−0.2279) × SOCS2 (5‐year area under curve = 0.706). The risk score system may serve as an effective novel prognostic system for HCC patients. This study might provide novel ideas for prognostic or therapeutic biomarkers for HCC. John Wiley and Sons Inc. 2021-11-02 2021-12 /pmc/articles/PMC8650024/ /pubmed/34726341 http://dx.doi.org/10.1111/jcmm.17035 Text en © 2021 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Lai, Enjiang Tai, Yang Jiang, Jingsun Zhao, Chong Xiao, Yang Quan, Xin Wu, Hao Gao, Jinhang Prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma |
title | Prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma |
title_full | Prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma |
title_fullStr | Prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma |
title_full_unstemmed | Prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma |
title_short | Prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma |
title_sort | prognostic evaluation and immune infiltration analysis of five bioinformatic selected genes in hepatocellular carcinoma |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8650024/ https://www.ncbi.nlm.nih.gov/pubmed/34726341 http://dx.doi.org/10.1111/jcmm.17035 |
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