Cargando…
Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years
BACKGROUND: Autophagy is closely related to the progression of breast cancer. The aim at this study is to establish a prognostic-related model comprised of hub autophagy genes (AGs) to assess patient prognosis. Simultaneously, the model can guide clinicians to make up individualized strategies and s...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8650421/ https://www.ncbi.nlm.nih.gov/pubmed/34876005 http://dx.doi.org/10.1186/s12859-021-04503-y |
_version_ | 1784611197543251968 |
---|---|
author | Li, Xiaolong Zhang, Hengchao Liu, Jingjing Li, Ping Sun, Yi |
author_facet | Li, Xiaolong Zhang, Hengchao Liu, Jingjing Li, Ping Sun, Yi |
author_sort | Li, Xiaolong |
collection | PubMed |
description | BACKGROUND: Autophagy is closely related to the progression of breast cancer. The aim at this study is to establish a prognostic-related model comprised of hub autophagy genes (AGs) to assess patient prognosis. Simultaneously, the model can guide clinicians to make up individualized strategies and stratify patients aged 40–60 years based on risk level. METHODS: The hub AGs were identified with univariate COX regression and LASSO regression. The functions and alterations of these selected AGs were analyzed as well. Moreover, the multivariate COX regression and correlation analysis between hub AGs and clinicopathological parameters were done. RESULTS: Totally, 33 prognostic-related AGs were obtained from the univariate COX regression (P < 0.05). SERPINA1, HSPA8, HSPB8, MAP1LC3A, and DIRAS3 were identified to constitute the prognostic model by the LASSO regression. The survival curve of patients in the high-risk and low-risk groups was statistically significant (P < 0.05). The 3-year and 5-year ROC displayed that their AUC value reached 0.762 and 0.825, respectively. Stage and risk scores were independent risk factors relevant to prognosis. RB1CC1, RPS6KB1, and BIRC6 were identified as the most predominant mutant genes. It was found that AGs were mainly involved in regulating the endopeptidases synthesis and played important roles in the ErbB signal pathway. SERPIN1, risk score was closely related to the stage (P < 0.05); HSPA8, risk score were closely related to T stag (P < 0.05); HSPB8 was closely related to N stag (P < 0.05). CONCLUSIONS: Our prognostic model had the relatively robust predictive ability on prognosis for patients aged 40–60 years. If the stage was added into the prognostic model, the predictive ability would be more powerful. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-021-04503-y. |
format | Online Article Text |
id | pubmed-8650421 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-86504212021-12-07 Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years Li, Xiaolong Zhang, Hengchao Liu, Jingjing Li, Ping Sun, Yi BMC Bioinformatics Research BACKGROUND: Autophagy is closely related to the progression of breast cancer. The aim at this study is to establish a prognostic-related model comprised of hub autophagy genes (AGs) to assess patient prognosis. Simultaneously, the model can guide clinicians to make up individualized strategies and stratify patients aged 40–60 years based on risk level. METHODS: The hub AGs were identified with univariate COX regression and LASSO regression. The functions and alterations of these selected AGs were analyzed as well. Moreover, the multivariate COX regression and correlation analysis between hub AGs and clinicopathological parameters were done. RESULTS: Totally, 33 prognostic-related AGs were obtained from the univariate COX regression (P < 0.05). SERPINA1, HSPA8, HSPB8, MAP1LC3A, and DIRAS3 were identified to constitute the prognostic model by the LASSO regression. The survival curve of patients in the high-risk and low-risk groups was statistically significant (P < 0.05). The 3-year and 5-year ROC displayed that their AUC value reached 0.762 and 0.825, respectively. Stage and risk scores were independent risk factors relevant to prognosis. RB1CC1, RPS6KB1, and BIRC6 were identified as the most predominant mutant genes. It was found that AGs were mainly involved in regulating the endopeptidases synthesis and played important roles in the ErbB signal pathway. SERPIN1, risk score was closely related to the stage (P < 0.05); HSPA8, risk score were closely related to T stag (P < 0.05); HSPB8 was closely related to N stag (P < 0.05). CONCLUSIONS: Our prognostic model had the relatively robust predictive ability on prognosis for patients aged 40–60 years. If the stage was added into the prognostic model, the predictive ability would be more powerful. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-021-04503-y. BioMed Central 2021-12-07 /pmc/articles/PMC8650421/ /pubmed/34876005 http://dx.doi.org/10.1186/s12859-021-04503-y Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Li, Xiaolong Zhang, Hengchao Liu, Jingjing Li, Ping Sun, Yi Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years |
title | Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years |
title_full | Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years |
title_fullStr | Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years |
title_full_unstemmed | Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years |
title_short | Five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years |
title_sort | five crucial prognostic-related autophagy genes stratified female breast cancer patients aged 40–60 years |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8650421/ https://www.ncbi.nlm.nih.gov/pubmed/34876005 http://dx.doi.org/10.1186/s12859-021-04503-y |
work_keys_str_mv | AT lixiaolong fivecrucialprognosticrelatedautophagygenesstratifiedfemalebreastcancerpatientsaged4060years AT zhanghengchao fivecrucialprognosticrelatedautophagygenesstratifiedfemalebreastcancerpatientsaged4060years AT liujingjing fivecrucialprognosticrelatedautophagygenesstratifiedfemalebreastcancerpatientsaged4060years AT liping fivecrucialprognosticrelatedautophagygenesstratifiedfemalebreastcancerpatientsaged4060years AT sunyi fivecrucialprognosticrelatedautophagygenesstratifiedfemalebreastcancerpatientsaged4060years |