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Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol

Neutral lipids (NLs) are an abundant class of cellular lipids. They are characterized by the total lack of charged chemical groups in their structure, and, as a consequence, they play a major role in intracellular lipid storage. NLs that carry a glycerol backbone, such as triacylglycerols (TGs) and...

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Autores principales: Campomanes, Pablo, Prabhu, Janak, Zoni, Valeria, Vanni, Stefano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8651513/
https://www.ncbi.nlm.nih.gov/pubmed/34939045
http://dx.doi.org/10.1016/j.bpr.2021.100034
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author Campomanes, Pablo
Prabhu, Janak
Zoni, Valeria
Vanni, Stefano
author_facet Campomanes, Pablo
Prabhu, Janak
Zoni, Valeria
Vanni, Stefano
author_sort Campomanes, Pablo
collection PubMed
description Neutral lipids (NLs) are an abundant class of cellular lipids. They are characterized by the total lack of charged chemical groups in their structure, and, as a consequence, they play a major role in intracellular lipid storage. NLs that carry a glycerol backbone, such as triacylglycerols (TGs) and diacylglycerols (DGs), are also involved in the biosynthetic pathway of cellular phospholipids, and they have recently been the subject of numerous structural investigations by means of atomistic molecular dynamics simulations. However, conflicting results on the physicochemical behavior of NLs were observed depending on the nature of the atomistic force field used. Here, we show that current phospholipid-derived CHARMM36 parameters for DGs and TGs cannot adequately reproduce interfacial properties of these NLs because of excessive hydrophilicity at the glycerol-ester region. By following a CHARMM36-consistent parameterization strategy, we develop improved parameters for both TGs and DGs that are compatible with both cutoff-based and particle mesh Ewald schemes for the treatment of Lennard-Jones interactions. We show that our improved parameters can reproduce interfacial properties of NLs and their behavior in more complex lipid assemblies. We discuss the implications of our findings in the context of intracellular lipid storage and NLs’ cellular activity.
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spelling pubmed-86515132021-12-20 Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol Campomanes, Pablo Prabhu, Janak Zoni, Valeria Vanni, Stefano Biophys Rep (N Y) Article Neutral lipids (NLs) are an abundant class of cellular lipids. They are characterized by the total lack of charged chemical groups in their structure, and, as a consequence, they play a major role in intracellular lipid storage. NLs that carry a glycerol backbone, such as triacylglycerols (TGs) and diacylglycerols (DGs), are also involved in the biosynthetic pathway of cellular phospholipids, and they have recently been the subject of numerous structural investigations by means of atomistic molecular dynamics simulations. However, conflicting results on the physicochemical behavior of NLs were observed depending on the nature of the atomistic force field used. Here, we show that current phospholipid-derived CHARMM36 parameters for DGs and TGs cannot adequately reproduce interfacial properties of these NLs because of excessive hydrophilicity at the glycerol-ester region. By following a CHARMM36-consistent parameterization strategy, we develop improved parameters for both TGs and DGs that are compatible with both cutoff-based and particle mesh Ewald schemes for the treatment of Lennard-Jones interactions. We show that our improved parameters can reproduce interfacial properties of NLs and their behavior in more complex lipid assemblies. We discuss the implications of our findings in the context of intracellular lipid storage and NLs’ cellular activity. Elsevier 2021-11-20 /pmc/articles/PMC8651513/ /pubmed/34939045 http://dx.doi.org/10.1016/j.bpr.2021.100034 Text en © 2021 The Author(s) https://creativecommons.org/licenses/by/4.0/This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Campomanes, Pablo
Prabhu, Janak
Zoni, Valeria
Vanni, Stefano
Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol
title Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol
title_full Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol
title_fullStr Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol
title_full_unstemmed Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol
title_short Recharging your fats: CHARMM36 parameters for neutral lipids triacylglycerol and diacylglycerol
title_sort recharging your fats: charmm36 parameters for neutral lipids triacylglycerol and diacylglycerol
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8651513/
https://www.ncbi.nlm.nih.gov/pubmed/34939045
http://dx.doi.org/10.1016/j.bpr.2021.100034
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