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Genetic Architecture of Novel Sources for Reproductive Cold Tolerance in Sorghum
Enhancements in reproductive cold tolerance of sorghum are essential to expand growing areas into both high-latitude temperate areas and tropical high-altitude environments. Here we present first insights into the genetic architecture of this trait via genome-wide association studies in a broad gene...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8652046/ https://www.ncbi.nlm.nih.gov/pubmed/34899798 http://dx.doi.org/10.3389/fpls.2021.772177 |
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author | Chakrabarty, Subhadra Kravcov, Natalja Schaffasz, André Snowdon, Rod J. Wittkop, Benjamin Windpassinger, Steffen |
author_facet | Chakrabarty, Subhadra Kravcov, Natalja Schaffasz, André Snowdon, Rod J. Wittkop, Benjamin Windpassinger, Steffen |
author_sort | Chakrabarty, Subhadra |
collection | PubMed |
description | Enhancements in reproductive cold tolerance of sorghum are essential to expand growing areas into both high-latitude temperate areas and tropical high-altitude environments. Here we present first insights into the genetic architecture of this trait via genome-wide association studies in a broad genetic diversity set (n = 330) phenotyped in multi-location field trials including high-altitude tropical (Mexico) and high-latitude temperate (Germany) environments. We observed a high degree of phenotypic variation and identified several novel, temperate-adapted accessions with superior and environmentally stable cold tolerance. Good heritability indicates strong potential for implementation of reproductive cold tolerance in breeding. Although the trait was found to be strongly quantitative, promising genomic regions with multiple-trait associations were found, including hotspots on chromosomes 3 and 10 which contain candidate genes implicated in different developmental and survival processes under abiotic stress conditions. |
format | Online Article Text |
id | pubmed-8652046 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-86520462021-12-09 Genetic Architecture of Novel Sources for Reproductive Cold Tolerance in Sorghum Chakrabarty, Subhadra Kravcov, Natalja Schaffasz, André Snowdon, Rod J. Wittkop, Benjamin Windpassinger, Steffen Front Plant Sci Plant Science Enhancements in reproductive cold tolerance of sorghum are essential to expand growing areas into both high-latitude temperate areas and tropical high-altitude environments. Here we present first insights into the genetic architecture of this trait via genome-wide association studies in a broad genetic diversity set (n = 330) phenotyped in multi-location field trials including high-altitude tropical (Mexico) and high-latitude temperate (Germany) environments. We observed a high degree of phenotypic variation and identified several novel, temperate-adapted accessions with superior and environmentally stable cold tolerance. Good heritability indicates strong potential for implementation of reproductive cold tolerance in breeding. Although the trait was found to be strongly quantitative, promising genomic regions with multiple-trait associations were found, including hotspots on chromosomes 3 and 10 which contain candidate genes implicated in different developmental and survival processes under abiotic stress conditions. Frontiers Media S.A. 2021-11-24 /pmc/articles/PMC8652046/ /pubmed/34899798 http://dx.doi.org/10.3389/fpls.2021.772177 Text en Copyright © 2021 Chakrabarty, Kravcov, Schaffasz, Snowdon, Wittkop and Windpassinger. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Plant Science Chakrabarty, Subhadra Kravcov, Natalja Schaffasz, André Snowdon, Rod J. Wittkop, Benjamin Windpassinger, Steffen Genetic Architecture of Novel Sources for Reproductive Cold Tolerance in Sorghum |
title | Genetic Architecture of Novel Sources for Reproductive Cold Tolerance in Sorghum |
title_full | Genetic Architecture of Novel Sources for Reproductive Cold Tolerance in Sorghum |
title_fullStr | Genetic Architecture of Novel Sources for Reproductive Cold Tolerance in Sorghum |
title_full_unstemmed | Genetic Architecture of Novel Sources for Reproductive Cold Tolerance in Sorghum |
title_short | Genetic Architecture of Novel Sources for Reproductive Cold Tolerance in Sorghum |
title_sort | genetic architecture of novel sources for reproductive cold tolerance in sorghum |
topic | Plant Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8652046/ https://www.ncbi.nlm.nih.gov/pubmed/34899798 http://dx.doi.org/10.3389/fpls.2021.772177 |
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