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Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials

Spatiotemporal patterns of large-scale spiking and field potentials of the rodent hippocampus encode spatial representations during maze runs, immobility, and sleep. Here, we show that multisite hippocampal field potential amplitude at ultra-high-frequency band (FPA(uhf)), a generalized form of mult...

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Detalles Bibliográficos
Autores principales: Cao, Liang, Varga, Viktor, Chen, Zhe S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8654278/
https://www.ncbi.nlm.nih.gov/pubmed/34888543
http://dx.doi.org/10.1016/j.crmeth.2021.100101
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author Cao, Liang
Varga, Viktor
Chen, Zhe S.
author_facet Cao, Liang
Varga, Viktor
Chen, Zhe S.
author_sort Cao, Liang
collection PubMed
description Spatiotemporal patterns of large-scale spiking and field potentials of the rodent hippocampus encode spatial representations during maze runs, immobility, and sleep. Here, we show that multisite hippocampal field potential amplitude at ultra-high-frequency band (FPA(uhf)), a generalized form of multiunit activity, provides not only a fast and reliable reconstruction of the rodent's position when awake, but also a readout of replay content during sharp-wave ripples. This FPA(uhf) feature may serve as a robust real-time decoding strategy from large-scale recordings in closed-loop experiments. Furthermore, we develop unsupervised learning approaches to extract low-dimensional spatiotemporal FPA(uhf) features during run and ripple periods and to infer latent dynamical structures from lower-rank FPA(uhf) features. We also develop an optical flow-based method to identify propagating spatiotemporal LFP patterns from multisite array recordings, which can be used as a decoding application. Finally, we develop a prospective decoding strategy to predict an animal's future decision in goal-directed navigation.
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spelling pubmed-86542782021-12-08 Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials Cao, Liang Varga, Viktor Chen, Zhe S. Cell Rep Methods Article Spatiotemporal patterns of large-scale spiking and field potentials of the rodent hippocampus encode spatial representations during maze runs, immobility, and sleep. Here, we show that multisite hippocampal field potential amplitude at ultra-high-frequency band (FPA(uhf)), a generalized form of multiunit activity, provides not only a fast and reliable reconstruction of the rodent's position when awake, but also a readout of replay content during sharp-wave ripples. This FPA(uhf) feature may serve as a robust real-time decoding strategy from large-scale recordings in closed-loop experiments. Furthermore, we develop unsupervised learning approaches to extract low-dimensional spatiotemporal FPA(uhf) features during run and ripple periods and to infer latent dynamical structures from lower-rank FPA(uhf) features. We also develop an optical flow-based method to identify propagating spatiotemporal LFP patterns from multisite array recordings, which can be used as a decoding application. Finally, we develop a prospective decoding strategy to predict an animal's future decision in goal-directed navigation. Elsevier 2021-10-25 /pmc/articles/PMC8654278/ /pubmed/34888543 http://dx.doi.org/10.1016/j.crmeth.2021.100101 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Cao, Liang
Varga, Viktor
Chen, Zhe S.
Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials
title Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials
title_full Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials
title_fullStr Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials
title_full_unstemmed Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials
title_short Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials
title_sort uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8654278/
https://www.ncbi.nlm.nih.gov/pubmed/34888543
http://dx.doi.org/10.1016/j.crmeth.2021.100101
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