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Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials
Spatiotemporal patterns of large-scale spiking and field potentials of the rodent hippocampus encode spatial representations during maze runs, immobility, and sleep. Here, we show that multisite hippocampal field potential amplitude at ultra-high-frequency band (FPA(uhf)), a generalized form of mult...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8654278/ https://www.ncbi.nlm.nih.gov/pubmed/34888543 http://dx.doi.org/10.1016/j.crmeth.2021.100101 |
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author | Cao, Liang Varga, Viktor Chen, Zhe S. |
author_facet | Cao, Liang Varga, Viktor Chen, Zhe S. |
author_sort | Cao, Liang |
collection | PubMed |
description | Spatiotemporal patterns of large-scale spiking and field potentials of the rodent hippocampus encode spatial representations during maze runs, immobility, and sleep. Here, we show that multisite hippocampal field potential amplitude at ultra-high-frequency band (FPA(uhf)), a generalized form of multiunit activity, provides not only a fast and reliable reconstruction of the rodent's position when awake, but also a readout of replay content during sharp-wave ripples. This FPA(uhf) feature may serve as a robust real-time decoding strategy from large-scale recordings in closed-loop experiments. Furthermore, we develop unsupervised learning approaches to extract low-dimensional spatiotemporal FPA(uhf) features during run and ripple periods and to infer latent dynamical structures from lower-rank FPA(uhf) features. We also develop an optical flow-based method to identify propagating spatiotemporal LFP patterns from multisite array recordings, which can be used as a decoding application. Finally, we develop a prospective decoding strategy to predict an animal's future decision in goal-directed navigation. |
format | Online Article Text |
id | pubmed-8654278 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-86542782021-12-08 Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials Cao, Liang Varga, Viktor Chen, Zhe S. Cell Rep Methods Article Spatiotemporal patterns of large-scale spiking and field potentials of the rodent hippocampus encode spatial representations during maze runs, immobility, and sleep. Here, we show that multisite hippocampal field potential amplitude at ultra-high-frequency band (FPA(uhf)), a generalized form of multiunit activity, provides not only a fast and reliable reconstruction of the rodent's position when awake, but also a readout of replay content during sharp-wave ripples. This FPA(uhf) feature may serve as a robust real-time decoding strategy from large-scale recordings in closed-loop experiments. Furthermore, we develop unsupervised learning approaches to extract low-dimensional spatiotemporal FPA(uhf) features during run and ripple periods and to infer latent dynamical structures from lower-rank FPA(uhf) features. We also develop an optical flow-based method to identify propagating spatiotemporal LFP patterns from multisite array recordings, which can be used as a decoding application. Finally, we develop a prospective decoding strategy to predict an animal's future decision in goal-directed navigation. Elsevier 2021-10-25 /pmc/articles/PMC8654278/ /pubmed/34888543 http://dx.doi.org/10.1016/j.crmeth.2021.100101 Text en © 2021 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Article Cao, Liang Varga, Viktor Chen, Zhe S. Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials |
title | Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials |
title_full | Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials |
title_fullStr | Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials |
title_full_unstemmed | Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials |
title_short | Uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials |
title_sort | uncovering spatial representations from spatiotemporal patterns of rodent hippocampal field potentials |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8654278/ https://www.ncbi.nlm.nih.gov/pubmed/34888543 http://dx.doi.org/10.1016/j.crmeth.2021.100101 |
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