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Ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients

Background: Glioma is a malignant intracranial tumor and the most fatal cancer. The role of ferroptosis in the clinical progression of gliomas is unclear. Method: Univariate and least absolute shrinkage and selection operator (Lasso) Cox regression methods were used to develop a ferroptosis-related...

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Autores principales: Hu, Yan, Tu, Zewei, Lei, Kunjian, Huang, Kai, Zhu, Xingen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8655507/
https://www.ncbi.nlm.nih.gov/pubmed/34726238
http://dx.doi.org/10.1042/BSR20211640
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author Hu, Yan
Tu, Zewei
Lei, Kunjian
Huang, Kai
Zhu, Xingen
author_facet Hu, Yan
Tu, Zewei
Lei, Kunjian
Huang, Kai
Zhu, Xingen
author_sort Hu, Yan
collection PubMed
description Background: Glioma is a malignant intracranial tumor and the most fatal cancer. The role of ferroptosis in the clinical progression of gliomas is unclear. Method: Univariate and least absolute shrinkage and selection operator (Lasso) Cox regression methods were used to develop a ferroptosis-related signature (FRSig) using a cohort of glioma patients from the Chinese Glioma Genome Atlas (CGGA), and was validated using an independent cohort of glioma patients from The Cancer Genome Atlas (TCGA). A single-sample gene set enrichment analysis (ssGSEA) was used to calculate levels of the immune infiltration. Multivariate Cox regression was used to determine the independent prognostic role of clinicopathological factors and to establish a nomogram model for clinical application. Results: We analyzed the correlations between the clinicopathological features and ferroptosis-related gene (FRG) expression and established an FRSig to calculate the risk score for individual glioma patients. Patients were stratified into two subgroups with distinct clinical outcomes. Immune cell infiltration in the glioma microenvironment and immune-related indexes were identified that significantly correlated with the FRSig, the tumor mutation burden (TMB), copy number alteration (CNA), and immune checkpoint expression was also significantly positively correlated with the FRSig score. Ultimately, an FRSig-based nomogram model was constructed using the independent prognostic factors age, World Health Organization (WHO) grade, and FRSig score. Conclusion: We established the FRSig to assess the prognosis of glioma patients. The FRSig also represented the glioma microenvironment status. Our FRSig will contribute to improve patient management and individualized therapy by offering a molecular biomarker signature for precise treatment.
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spelling pubmed-86555072021-12-21 Ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients Hu, Yan Tu, Zewei Lei, Kunjian Huang, Kai Zhu, Xingen Biosci Rep Bioinformatics Background: Glioma is a malignant intracranial tumor and the most fatal cancer. The role of ferroptosis in the clinical progression of gliomas is unclear. Method: Univariate and least absolute shrinkage and selection operator (Lasso) Cox regression methods were used to develop a ferroptosis-related signature (FRSig) using a cohort of glioma patients from the Chinese Glioma Genome Atlas (CGGA), and was validated using an independent cohort of glioma patients from The Cancer Genome Atlas (TCGA). A single-sample gene set enrichment analysis (ssGSEA) was used to calculate levels of the immune infiltration. Multivariate Cox regression was used to determine the independent prognostic role of clinicopathological factors and to establish a nomogram model for clinical application. Results: We analyzed the correlations between the clinicopathological features and ferroptosis-related gene (FRG) expression and established an FRSig to calculate the risk score for individual glioma patients. Patients were stratified into two subgroups with distinct clinical outcomes. Immune cell infiltration in the glioma microenvironment and immune-related indexes were identified that significantly correlated with the FRSig, the tumor mutation burden (TMB), copy number alteration (CNA), and immune checkpoint expression was also significantly positively correlated with the FRSig score. Ultimately, an FRSig-based nomogram model was constructed using the independent prognostic factors age, World Health Organization (WHO) grade, and FRSig score. Conclusion: We established the FRSig to assess the prognosis of glioma patients. The FRSig also represented the glioma microenvironment status. Our FRSig will contribute to improve patient management and individualized therapy by offering a molecular biomarker signature for precise treatment. Portland Press Ltd. 2021-12-07 /pmc/articles/PMC8655507/ /pubmed/34726238 http://dx.doi.org/10.1042/BSR20211640 Text en © 2021 The Author(s). https://creativecommons.org/licenses/by/4.0/This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Bioinformatics
Hu, Yan
Tu, Zewei
Lei, Kunjian
Huang, Kai
Zhu, Xingen
Ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients
title Ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients
title_full Ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients
title_fullStr Ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients
title_full_unstemmed Ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients
title_short Ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients
title_sort ferroptosis-related gene signature correlates with the tumor immune features and predicts the prognosis of glioma patients
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8655507/
https://www.ncbi.nlm.nih.gov/pubmed/34726238
http://dx.doi.org/10.1042/BSR20211640
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