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Optimizing Release of Nucleic Acids of African Swine Fever Virus and Influenza A Virus from FTA Cards
FTA cards and related products simplify the collection, transport, and transient storage of biological sample fluids. Here, we have compared the yield and quality of DNA and RNA released from seven different FTA cards using seven releasing/extraction methods with eleven experimental eluates. For the...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8657678/ https://www.ncbi.nlm.nih.gov/pubmed/34884719 http://dx.doi.org/10.3390/ijms222312915 |
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author | Elnagar, Ahmed Harder, Timm C. Blome, Sandra Beer, Martin Hoffmann, Bernd |
author_facet | Elnagar, Ahmed Harder, Timm C. Blome, Sandra Beer, Martin Hoffmann, Bernd |
author_sort | Elnagar, Ahmed |
collection | PubMed |
description | FTA cards and related products simplify the collection, transport, and transient storage of biological sample fluids. Here, we have compared the yield and quality of DNA and RNA released from seven different FTA cards using seven releasing/extraction methods with eleven experimental eluates. For the validation, dilution series of African swine fever virus (ASFV) positive EDTA blood and Influenza A virus (IAV) positive allantoic fluid were used. Based on our data, we conclude that direct PCR amplification without the need for additional nucleic acid extraction and purification could be suitable and more convenient for ASFV DNA release from FTA cards. In contrast, IAV RNA loads can be amplified from FTA card punches if a standard extraction procedure including a lysis step is applied. These differences between the amplifiable viral DNA and RNA after releasing and extraction are not influenced by the type of commercial FTA card or the eleven different nucleic acid releasing procedures used for the comparative analyses. In general, different commercial FTA cards were successfully used for the storage and recovery of the ASFV and IAV genetic material suitable for PCR. Nevertheless, the usage of optimized nucleic acid releasing protocols could improve the recovery of the viral genome of both viruses. Here, the application of Chelex(®) Resin 100 buffer mixed with 1 × Tris EDTA buffer (TE, pH 8.0) or with TED 10 (TE buffer and Dimethylsulfoxid) delivered the best results and can be used as a universal method for releasing viral DNA and RNA from FTA cards. |
format | Online Article Text |
id | pubmed-8657678 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-86576782021-12-10 Optimizing Release of Nucleic Acids of African Swine Fever Virus and Influenza A Virus from FTA Cards Elnagar, Ahmed Harder, Timm C. Blome, Sandra Beer, Martin Hoffmann, Bernd Int J Mol Sci Article FTA cards and related products simplify the collection, transport, and transient storage of biological sample fluids. Here, we have compared the yield and quality of DNA and RNA released from seven different FTA cards using seven releasing/extraction methods with eleven experimental eluates. For the validation, dilution series of African swine fever virus (ASFV) positive EDTA blood and Influenza A virus (IAV) positive allantoic fluid were used. Based on our data, we conclude that direct PCR amplification without the need for additional nucleic acid extraction and purification could be suitable and more convenient for ASFV DNA release from FTA cards. In contrast, IAV RNA loads can be amplified from FTA card punches if a standard extraction procedure including a lysis step is applied. These differences between the amplifiable viral DNA and RNA after releasing and extraction are not influenced by the type of commercial FTA card or the eleven different nucleic acid releasing procedures used for the comparative analyses. In general, different commercial FTA cards were successfully used for the storage and recovery of the ASFV and IAV genetic material suitable for PCR. Nevertheless, the usage of optimized nucleic acid releasing protocols could improve the recovery of the viral genome of both viruses. Here, the application of Chelex(®) Resin 100 buffer mixed with 1 × Tris EDTA buffer (TE, pH 8.0) or with TED 10 (TE buffer and Dimethylsulfoxid) delivered the best results and can be used as a universal method for releasing viral DNA and RNA from FTA cards. MDPI 2021-11-29 /pmc/articles/PMC8657678/ /pubmed/34884719 http://dx.doi.org/10.3390/ijms222312915 Text en © 2021 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Elnagar, Ahmed Harder, Timm C. Blome, Sandra Beer, Martin Hoffmann, Bernd Optimizing Release of Nucleic Acids of African Swine Fever Virus and Influenza A Virus from FTA Cards |
title | Optimizing Release of Nucleic Acids of African Swine Fever Virus and Influenza A Virus from FTA Cards |
title_full | Optimizing Release of Nucleic Acids of African Swine Fever Virus and Influenza A Virus from FTA Cards |
title_fullStr | Optimizing Release of Nucleic Acids of African Swine Fever Virus and Influenza A Virus from FTA Cards |
title_full_unstemmed | Optimizing Release of Nucleic Acids of African Swine Fever Virus and Influenza A Virus from FTA Cards |
title_short | Optimizing Release of Nucleic Acids of African Swine Fever Virus and Influenza A Virus from FTA Cards |
title_sort | optimizing release of nucleic acids of african swine fever virus and influenza a virus from fta cards |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8657678/ https://www.ncbi.nlm.nih.gov/pubmed/34884719 http://dx.doi.org/10.3390/ijms222312915 |
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